RNA id: XR_005640728.1


Basic Information

Item Value
RNA id XR_005640728.1
length 3875
RNA type transcript
GC content 0.53
exon number 33
gene id LOC120568437
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33217190 ~ 33256937 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccaaccccactTCCTTGTGAATGGACCGGTTTGGGACGGTCCCGTGCAGCGGCGCAGCGTGGATCCGTGTTGTGTCAGCGCGcgccttcacacacacacacacacgttggagCCGCGCGGTGCTGCACGGGGCACGCGAGCAAACTCTTGAATGCAACACTTCCCTCGCCTGGCTATGTAACGTCTCGTGCATCGATAGAGAAGAGAACTAAGTTGAATTGTTGCACTTCAGACAGAATGAAGACGAGAGAGGTGAAGATTATAAACCAGGGTCTGGAGGATGAGATGGAGGTGTGgggttaccaaccctgcctgtGGAAGATGATCCTGGTGGGTGTGGGTGCTGTGTGCTCGGGGggtctcctgctgctgctgctctactGGCTGCCTGAGTGGGGCGTTAAGGTCACCTGCACATGCACCTCGCTGAGGGACGCGCACACACTGCTGCTCAGGACCACGGATGAGTTCAGGCAGTGGTTTCGAGCCAAAGTACATGTGATTTCGGCTCCAGGGAAGAAGCCCTTAGACAGCCTGGACCTGCAGTCCACGGCTCAGCTGCCCAATGGAGACGGAGACCACGGCATCAGTGCTGTGCACCAGGAGCATCATGGGAAATGTGCCCATAGACAGCCTGTTCAGATCCACTACTTCACCCACCACAGCACTAAATACTACTGGAATGATGTGATGCAGAACTTTGAATTGCATAAAGGCTTGGAGGATTTGAAGGTGAGCTGTGCAAGCATCCACTCCTCCCACAGCTCCGGGCTTTCTAAAACCCTGCAGGACTACaggagGTTGTTTTTCGGGGAGAATGAGATTGCTGTAAGAGTGCCGTCTATATTCAAGCTCCTCATAAAGGAAGTGTTGAATCCTTTCTACATCTTCCAGCTCTTCAGTGTTGTTCTGTGGAGTGCTGAGGACTACTACTATTATGCTACCGCCATAGTTTTCATGTCTGTGATTTCAATAGCTACCTCACTGTATACCATTAAAAAGCAATATGTGATGCTGCATGACATGGTGGCAACACACAGCGTGGTCCGTGTCTCAGTGTGCAGAGGAAATAAAGATATTGAACAGGCCATGTCAACAGATCTCGTGCCCGGTGATGTCATCATTATTCCAGCGAATGGGATGATCATGCCCTGCGACGCTGTGCTCATCTGTGGGACCTGCATCATAAATGAGAGCATGCTGACAGGAGAGAGTGTGCCAGTTACCAAGACAAGTCTGCCTAGTTCAGGCGAGGAGGCGGCCCTGAGCTACAATATAGAGGAGCACAAGAGACACACCCTGTTCTGTGGTACACGTGTTATCCAGACCCGCTTCTACGCTGGAGAACTGGTGAAGGCCGTTGTGGTCAGAACAGGCTTCAGTACAGAGAAAGGCCAACTGGTGCGCTCCATCCTCTACCCTAAACCCACAGACTTCAAGCTGTACCGCGATGCTTACCTGTTCCTGTTGTGTCTGGTGGGGGTGGCGGGGATCGGTTTCCTCTACACCATCGTCCTCAGTATCATGAACAAGGTTCCAGCTAAAACTATCATCACTGAATCTCTGGACATCATCACCATCACCGTGCCCCCGGCCTTACCGGCAGCCATGACAGCGGGCATTGTGTACGCGCAGCGTCGTCTGAAGCGCGTCGGCATCTTCTGCATCAGTCCTCAGAGGATCAACATGTGCGGTCAACTGAACCTGGTTTGCTTTGACAAGACTGGTACTCTGACTGAAGATGGTTTGGACCTGTGGGGTGTTCAGACAGCTGAAGATGGCAGCTTTTCTCCCCCGGAGGCTGATGCAGCTAAAGGAAGTCTGGTTAACAGTGCATTTGTGGCCTGCATGGCTACCTGCCACTCACTGACCAAGATAGAGGGCGAGCTCTCCGGAGACCCTTTAGACCTCAAGATGTTCAACGCTACAGGCTGGATCCTAGAGGAGCCCACAGAGGAAGAGACTGCACTCCACAATCCCATAATGCCCACAGTTGTGCGACCTCCAAAGCACTCCGTCCCTGAAGCCAGTCTGAAAAATCCACTAACGCAGAACATGGAGCTGTCTGAATTTTCATCCTTTGAGATTGGTATTGTGCGTCAGTTCCCCTTCTCCTCCACGCTGCAGAGGATGAGTGTGGTGGTCAGGAGGCTCGGGGAGAAACACATGAACGCTTTCTTGAAGGGAGCCCCGGAGGTGGTGGCCAGCCTCTGCAAACAGCACACAGTTCCACAGAGCTTCCCAGAGACTCTGGAGAGCTACACCAGGCAGGGCTTCAGGGTTATTGCCCTGGCACATCGGCAGCTGGAGGCCAAACTCTCCTGGCACAAAGTCCAGAGCCTCAGCAGGGACCTGATAGAAACCAACATGGAGTTCCTTGGTTTGATCATCATGCAGAACAAAATAAAAGAGGAAACTGCCGGGGTTTTACGCGAATTACGTCAAGCTAACATCCGCACTTTGATGGTCACGGGTGACAACATGTTGACGGCGATATCAGTGGCTCGAGAATGTGGGATGGTCCGCGCGCATGAGACGGTCATTATTGCGGACGCTGCGCCTCCTAAAGATTTCCACCTCGCGAGTATCACATGGCATTACACTGAAACCCCTGCTCCCACCACCAGGGACAATCAGACTGTGGAGATAAACCTGCAGGACGCGGTATATGACAAAGAGAAAGTTCCTCAGCAGGAACAACGCTATCACTTTGCCGTGACTGGCAGAGCCTTTGCTGTCATCACTGAGCACTTCCCACAGCTCGTCCAAAAGCTGGTGCTGAGAGCCACTGTGTTTGCCCGCATGGCTCCAGACCAGAAGACTCAGCTGGTGGAAGTCCTGCAGAGCATCGACTACACTGTTGGGATGTGTGGGGATGGTGCTAATGACTGTGGAgcttTAAAGCGAGCTCACAGTGGGATCTCTCTGTCTGAGCTGGAGGCCTCTGTTGCTTCACCCTTCACCTCCTCCACCCCCAACATCTCCTGTGTCCCCAACCTCATCAGGGAGGGCCGAGCTGCCCTCGTTACATCATTCTGCGTGTTCAAGTTCATGGCTCTGTACAGCATCATCCAGTACCTCAGCGTCACCCTGCTGTACTCGATTCTCAGCAATTTGGGAGACTTCCAGTTCCTCTTCATTGACATCGCCATCATTCTCATCATTGCCTTCACAATGAGTCTGAACCCGGCGTGGAAGGAGCTGGTGTGGCAGCGCCCGCCGTCCAGTCTGATCTCTGGCCCGCTGCTCTTCTCCGTCCTGACCCAGATCCTCACCAGCCTGGTCTTCCAGGTCCTGGCTTTCCTCTTAGTACAACAGCAGAGCTGGTATGAGACATGGACGCCTCAGTCAGATGCCTGTAATGTTTCCAGATCAAGTCTCTCTTACAGCCTGAATGTAACAAGCCCTCATGACCACAAAAACATCAGGAACTACGAGAACACCACCCTCTTCTACGTCTCCTCCTTCCAGTATTTGGCTGTGGCCATCATTTTCTCCAAGGGAAAGCCCTTCAGACAGCCCAGCTACAAGAACTGGCCGTTCATGCTGTCCTGCATCGGTCTGTATACttttctcctcctcatcatGCTGTATCCTGTTCCTGCCATCGACAGCTTCCTGGAGTGCTCTTTTCCTGCTGCTCTGCCTCCACTCAGATCGTGTGTGTTCCCCCTGACTGGCGCGTTACACTGGCCATCATTGTCATAGTGAATGCGGCTGTGTCTTTCATGCTGGAGATTTTGATCCTTGACATCATCTTGCGGACGCTAGTTTTCAGATGCAATCAGGGGCTTAATCGCCCCACAGAGCCCCCCTCTGCTGACACACTTCAGGAGGCCAATGACCACTGGGGCTCGTCCTTCCTCTCCTGGTTG

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640732.1 lncRNA downstream 42965 33172839 ~ 33176759 (-) True LOC120568465
TU161215 lncRNA downstream 239949 32979206 ~ 32979775 (-) False zgc:66427
TU161214 lncRNA downstream 239949 32979360 ~ 32979775 (-) False zgc:66427
TU161209 lncRNA downstream 246721 32972675 ~ 32973003 (-) True G119686
XR_005640731.1 lncRNA downstream 279564 32938701 ~ 32940160 (-) False LOC120568464
TU161442 lncRNA upstream 35824 33292760 ~ 33296161 (-) True G119847
TU161448 lncRNA upstream 77288 33334224 ~ 33334542 (-) True G119852
TU161461 lncRNA upstream 124818 33381754 ~ 33381998 (-) True G119861
TU161469 lncRNA upstream 164453 33421389 ~ 33433896 (-) True selenof
TU161481 lncRNA upstream 242698 33499634 ~ 33499953 (-) True G119881
XM_039816018.1 mRNA downstream 14873 33202881 ~ 33204851 (-) True LOC120568460
XM_039816009.1 mRNA downstream 28255 33181456 ~ 33191469 (-) True LOC120568453
XM_039816007.1 mRNA downstream 28262 33181456 ~ 33191462 (-) False LOC120568453
XM_039816008.1 mRNA downstream 28271 33181456 ~ 33191453 (-) False LOC120568453
XM_039816017.1 mRNA downstream 231165 32979314 ~ 32988559 (-) True zgc:66427
XM_039816743.1 mRNA upstream 334 33257270 ~ 33270528 (-) False LOC120568969
XM_039816740.1 mRNA upstream 334 33257270 ~ 33270528 (-) True LOC120568969
XM_039815270.1 mRNA upstream 47843 33304779 ~ 33312730 (-) True grk7a
XM_039814838.1 mRNA upstream 64954 33321890 ~ 33325637 (-) True fbxo36b
XM_039815122.1 mRNA upstream 69270 33326206 ~ 33337752 (-) False LOC120567979
TU161146 other downstream 367327 32849719 ~ 32852397 (-) True G119631
TU161133 other downstream 387231 32828385 ~ 32832493 (-) False LOC120567697
TU161088 other downstream 454573 32762447 ~ 32765151 (-) False fcer1gl
TU161606 other upstream 397366 33654302 ~ 33659276 (-) True G119989
unassigned_transcript_565 other upstream 928080 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161838 other upstream 971690 34228626 ~ 34229050 (-) True G120168
TU161906 other upstream 1143887 34400823 ~ 34404013 (-) False G120230
unassigned_transcript_566 other upstream 1511505 34768441 ~ 34768514 (-) True trnan-guu_9

Expression Profile