RNA id: XM_039815974.1


Basic Information

Item Value
RNA id XM_039815974.1
length 3790
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC120568440
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32603143 ~ 32614898 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGTTTATTCTTTGTACCAattagcttctgctagctgaaATCGGCACACACTAAAACCAACAGCGAGCTAACACATTTGGCTGCAGTTTGTGTACTGGCAGCGGCTTCAGCAATGGCCTGTTTCGGCTAGCTAATGCGACTGAGTTACAGACACTTTTCTCGCTTTAAAGTTAAGGCTTCGCTGccactttgttgttgttttttggggtttgtttTTAACAATGCTGAGCAGCGTCGCTCTGCGGGCTCAGATTGCCTCCATAATCGATGCCCTGTCCAAAGCAGCTGTAGCAGAAATCGCCAAAGTTGTGGAGGATGGCGTGGTGGAGTTGCGGCTGGAAATATGTCAGCGTGAAAATGACATCAAGAAGCTGAAGGGCAACATTGAGGTTCTGCACGACGAGCTGAGATCACTGCAGGAGACAGTGACCCTGCGACCTGACAGCCATGGCAGAGATGATGGTCAGAATGGTGTTGGTGATGAGAGGAGCTTGCTTGAACAGGGGCCCGCTGATAAGGACACAAACAGCCTGTCCGTACCTGAGGTGCGGGTGAAATGTGAACCTGTGGAGGAAGGAAGTGAAGAGGCCAGAGAAGAAGAACTGGGCTCGTATGACCGGGACCGCACGCAGTGGAGGCTGACAACGCAAACTCCGGCAGGACGCAACAACTCCGACTATTTACAACTAGGGCAGAACCCCGTGTCGTGTCTCCCTGAATCTTCTCTGGACAGGGGACTGGCTGCGCCCTGCAGCAGCTCCTCTGGGTGTCAGCCGAGCGCGTTTGGCCGCGGGCTGCTGGGTTACGGTCCGTACCGTAACTCGTACAACATCGCGCGGAGGAGGACGGTGAAGAGGTTAATGTTTAAGAAAGGCTTCATCTGTCCATACTGCGGTAAATGTTTTGAGCGAGCCGGGCACCTGGAGAGGCATAAAAGGATACACACTGGCGAGAAGCCTTACCGCTGCGAGATATGCGGGCGACGCTTCAATCAGAAATGCAGCCTAAAGGAGCACACGAAGATACACAGAAGATGTATTGAGCCCAGTCCACTTGAGATCAAAGTGGGCAAAGAGAAACAGACTCCCGAGGGGAATCCATGTGCCGATGCTCCTCGCACCGAAGAAGAGAGCCAGGGGGAAGCTGAGGACGGCCTACCTAAGAACGAGGATATTCTCGCAACACCCGTACACGTCAAATCTGAGCCCGCAGAGGAGAACCTATTACAACCAGCGTTTCACGGAGCAGCCGAGCAGACGGGGGACAACCTCAGCGAGAACTTCCCAACATTTGCGAgagacagccagcagtggatGACCAGATTACACGGGCAAAACCACGCGGAGATCAGCGGCGCAGAGTACCTGGGCAGCTCGGCCTTCCCGGGGAAAGCTCAGTTACTGCCGCCACCAGTCGAAGCTTCTTGTAGCACGTTCTCCTTTCCAGGGAAACCGTACGGGGAGCTCAAAAACAGCATGGTCTCCCAAACACCGTTCGGATCCCCAGACACGCTTCTATCAAGCGAGGCGGGCTTGCACGGAATGGCGGCAGCGCTGAGTCACCACAGACAGAGAGGAATCAGGTCGATTCAGATGATCAAACCGAAGAAAAGCTTCGTCTGCCAGTACTGCGGCAAGGTCTTTGAGCGCGTCGGCCACCTCGAAAGACACTTACGAATTCATACCGGGGAGAAGCCGTATGGTTGCCAGATCTGCGGGAGGTGCTTCAATCAGAAGAGTAGCCTCAAGGGCCACATGAAGACGCACAGGAATGGGGAGAACGCAGATGTGCTGGAGGCCCATCATATGATGTTTACGATGCCTGATAGCCAGCCGTTGAAGAACCTGGCAGAAGCCAAGACCGGACTGTCAGCTTTAGAGGAACAGTTCCTGGGCACCGCGTACGGCGAGGCAGCTGGTGAGCAAACAGTGACGGTTAAGCTGGAGCCAAACGGGGAGGATTTCCAAACTCTACTGACTGATAACGACACCGGAGCACCCGACCACAGGCAGCTGTGGACATCAGGGATAGAGAAGAGTAGTGATCCTGACCAAGCGGTCTGCGTGCTTTTACATGATGCCAAGTATCACCTCAGTCCTGCTGCTGGAGCAGCCAACGGGCAGCAGGGATTTACATCGCCGATAAGAGATCTGCCTTTTCTAGACgacaaagaaaaggaagaaacgATGCACAATAATCAGTATTCTATGATGGGTATGCAATCAAGAAGCTCTGATATGACTCTGGCACCTGAGCTGCAAGATCAACATATTGCACCAGAGGCGGCTGTGAATGAGTACACAGCACTGAGTGATAGGGCTCGCGAGGGAGGTGTGTTTGAATTTAATATGAGCGCCTCAGGCAACCAGGCGGACAACTGTGACGGGGACGCCGCCGGGCAAAATTGCTTTATATGCTCAAGTTGTGGGCAAAGCTTTGatagttttaatttatttcagaGGCACCAGTGTAAAAATATCACAGAGCAATCCTTCAGTTGTGAGATATGTGGTAAGATTTTCAATCAGATGAGCATCCTGAAATTGCACCTTAAACTTCATGTATGATATACACTACAAAAGGAGAACTACGCGATTATCCACCAAGCTTCATCACATTCAGTCGTAACACATGGCAAAGTGCACACGGTCGACATGCCAATGTGACATCTAAATAAATGCTCGGCATGTCCCAAAAGTTAATGCAgaagaacaacaaaaaatatcttGTATTTGCAGGACTGATTAATTTCAATCTTCTTCGCAGTAACGCCAGTCCGTTAAGCTTCTGTCACATTTCCAGTACAACATGTACTTTGCAcaaaatattttcctttttaattttacCTACTTCATctcctcatttataaaacacttttttaaagGTGATTAAGCATTGTTGGGTGTGTGACACTGTTGATCCTTGCTTGCTTAAAGGACAATtacggcgcaaaatgaacctaggggttaataacgtgAAAAAATTCCAAAACAATCTTTCTTGGGACCATTCAACCATTAACTGAATAAGAATTTTGACCAAAAAGGCTGATAAATCTCTACGGAGGGTTAccgtgaaaagatacaggcaacgcaattttctgttcacatgAACGTGACATGTTAAAATCAGCTGTATGTTCACATGAACGGAGCATGTTAAAAGCAGTTGATAGAGACGGTCATGGCTACTGGAGGAGCGGAAGAACTTGGAAAAGCCGTGAGCGGCAGTTGGTAGTTGAGTTGCGTGAGAAAAGGGggctttgagccgggtacagggcaCCGCGAGCTGCTGGTCGTTTTGGCTGACATTATGGTTAAGTTTTGGCGACAAAAAGTGAGTGTTATgcggcaccaaaacgactagttaagtttaggaaaaagatggtggtttggattaaaacactgcCAAGGAACATTATTTAATGTTATTAACGTTATTGAAGTCCTTTGTTTTTCCTGGGAAAGCGAACTCCACTCCCCGGTTTGAACGCGCTGCTTTTTATGAAAGTTCTTTAAGTAATggaaagcatatatatatatatatatatatatatattcccccCTTTTTGTGCTGGTCCTAAAATTTATCCGATCCGTGACTCAAAACTGTGATCCGAAccgtgagttttgtgatccgttGCACACCTAATTAGAAACCCTaaatctttcagcatattgtaatttgAGTTGTCTGAGTGAcaactggtggtggtgatggcgcagtggatatgacacgtgcctttggtgtgggagatccgggttcaattcccactgcgatacatcaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161066 lncRNA downstream 9099 32593374 ~ 32594044 (-) True G119567
TU161018 lncRNA downstream 32461 32569997 ~ 32570682 (-) True G119528
TU161013 lncRNA downstream 36752 32565972 ~ 32566391 (-) True G119523
TU160974 lncRNA downstream 149095 32438827 ~ 32454048 (-) True G119492
TU160962 lncRNA downstream 184148 32417963 ~ 32418995 (-) True G119482
TU161069 lncRNA upstream 34791 32649689 ~ 32649976 (-) True G119570
TU161099 lncRNA upstream 142312 32757210 ~ 32757652 (-) True G119590
TU161102 lncRNA upstream 145674 32760572 ~ 32760843 (-) True G119593
TU161093 lncRNA upstream 146071 32760969 ~ 32765076 (-) True fcer1gl
TU161096 lncRNA upstream 147549 32762447 ~ 32765151 (-) False fcer1gl
XM_039816000.1 mRNA downstream 2687 32594658 ~ 32600456 (-) True LOC120568447
XM_039816152.1 mRNA downstream 47454 32538197 ~ 32555689 (-) False LOC120568564
XM_039816148.1 mRNA downstream 47454 32538197 ~ 32555689 (-) True LOC120568564
XM_039816151.1 mRNA downstream 49779 32538197 ~ 32553364 (-) False LOC120568564
XM_039816150.1 mRNA downstream 49817 32538197 ~ 32553326 (-) False LOC120568564
XM_039816003.1 mRNA upstream 3148 32618046 ~ 32623091 (-) True LOC120568450
XM_039816022.1 mRNA upstream 14544 32629442 ~ 32647388 (-) True si:dkeyp-68b7.12
XM_039815994.1 mRNA upstream 44637 32659535 ~ 32713327 (-) True tesk2
XM_039815996.1 mRNA upstream 109902 32724800 ~ 32754122 (-) False nectin4b
XM_039815995.1 mRNA upstream 109902 32724800 ~ 32754122 (-) True nectin4b
TU160944 other downstream 376783 32216502 ~ 32226360 (-) False G119465
TU160945 other downstream 376783 32218507 ~ 32226360 (-) True G119465
TU160835 other downstream 551704 32047477 ~ 32051439 (-) True G119379
TU160692 other downstream 1027953 31490252 ~ 31575190 (-) False zeb1a
TU160576 other downstream 1431533 31170382 ~ 31171610 (-) False G119169
TU161095 other upstream 147447 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 147447 32762345 ~ 32765076 (-) False fcer1gl
TU161088 other upstream 147549 32762447 ~ 32765151 (-) False fcer1gl
TU161089 other upstream 147549 32762447 ~ 32765151 (-) False fcer1gl
TU161092 other upstream 147549 32762447 ~ 32765151 (-) False fcer1gl

Expression Profile