RNA id: XM_039815981.1


Basic Information

Item Value
RNA id XM_039815981.1
length 3448
RNA type mRNA
GC content 0.47
exon number 18
gene id apol1
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33051005 ~ 33070053 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcagcacttgaACGCAGCACCAGGCTTGTGTCAAACTCCAAGGTGGGACCGGGTGggaccttttatatatgtcaatgggtgggactagctagctagctagtaggtGAGACAGACGCGCCCTCTCCAGGATGACAGCACAGgggaaagaaaatagaaaagtaACCGCTGCTCGGTTTCACTAATGTCTGCTTTATGAACCCACACAAGTCAGAAGGATCTGAGAGAAGTATTTGATCTCCAAgctgtttttttcttatctttttcttttttcacagaggagggagggacCTTTAACTTTCCAGCTTTAGCTAGTGCGTGAAAACAGCCGACAGTACCAACACGGGGATATAGGACGAACAGACAGAACTCTGCCTGAGGACAGAAACAGTTCAACATCGATTAACCAACGGCAAAAAACCAACCGCTAAACACGGGCGGGCGTTGCATAGCTTTAATGGATCGATACGATAACATGGATTTGGAGTTGGAGTGTGACGGAGAAGCTCAAAAATCATCGCTATTCGCTGGGATGTTCAAAAGATCCTCCAAGTCTGCAGAACCAGCTCTCCAAGCACAGGAGACAGGAGGGGTGTTCAGTGGGATGTTTAAAAAATCGCCAAAGCCTTTTGGAGCGAGGACACAATCTCAGCCTGTGAAGCAGACAAACTCAGATGTCGAGGATCCAGCTGTGGGCGGTGAAAAGTCATCAGATGACAAACAGGTCAAAAGCAAAATGATTCAGcaagagacagaggaaagaaGTGAAACTCCAGTGGTCCCACCCAGACCAACTGAAGAGGAGATGAAGAGGACGTCCACATACGTCAAAGTAAAAGCCAAAGGAACTGAGGATAACCAGGATAACCAGGCTATGATCTCCAGATCTGCCAGACCATCAGACGAGGAGCTTAACAGAACAACGGGACAAAAGCAGAATAGCAACCATCAGTTTAATTTGCTGCAGAGCCAATCAGATGGCGAAGGCCTCAAAAAAGATGAATCTGCAGAAGccgaagaggaggaagaggtgaaCGCCCCAGAAAGCAAAACAGCTCAGTCCGATGATGAAGGGCTGAAAGAAGAAGATGTTTCTTCAcccaaagaagaaaagaaagtcgAGGAGGGCCAGGACAAAACAGAGaccAAAGTCAAGAAACCTAAGAGACACAATCCCTTCATGCCTCGGGGCAagggcaAAAGTATACAGAGGAGCTCGCAGGAcggtgctgcaggaaaaacAGCAGAGGGTGTCTGCTCAGCTCCCGACAACTCTCGACATAATGAAGGTGGAAATAGATCATTGTTTGACCAGCTGGAGGACTTCCGTTTTGACCCAGCGCAGCCTGAAGACAGACAGGGTGTGGAGGACCTTATGGAATGGTGGAACACAGTGGAGTCTTGGGAGGACACGCTTCAAGATGATGACATGACAGAAAAAGAAGAGGCCAAAGCGTTTGCTGTGACGGCAGACAAGGTGCAGAAGGGCATCCGTGTCTTCAACAAACTGTTTTCGGAGCGCGCCGAGACCCTCTGGCAGCACGTCATGGACCTCAACAGCATCGCAGACGGCCTGGACAAGTTCAGCAAGAACACAAAGATTGCTCAAATCACCGGCGGCTCCACCAGCGCCCTCGGGGGCGTGGCCACCATCACCGGCCTTGCCCTGGCCCCGTTCACCATGGGAACCTCTTTGATTGTGACGGCGGTGGGATTGGGTGTGGCCACGGCCGGCGGGCTGACATCAGCGGGGGCCGGCATCTCCAACCAGGTCAACAACTCGATGGACCGCAAGAAGGTGGAGAAGATTGTGCAGGACTATCAGGAGAAGATGGACGACCTCAACAAGTGCCTGACGTTTGTCAAGCAGGGTATCGAGAACCTGAGGAGGTTTGACCTGATCAAAATGAAAAAGCATGCCTACAACCGTGACTTCCCAGCGCTCAATTTTAATTTCTACGAAGACGGCGCCATGGCAGGAAAGGCCATTCTCAACAACGCTAATGAGATCATGCGGTTGGTGCAGATCGCCAATATGGCGGGCAGCACAGCAGCCAGAGCGGTCCAGATTGCCAGTATGGCCACTGGTGTGCTCACGGGACTCTTTGTAGGCATGGACATCTACTTTGTGGCCAAGGACTCCAAAGAACTAAAGAAAGGGGCCAAGTCAGAGTTTGCTGCCAAAATCAGGGAGGTGGCTTTGCAGCTGCATGATGGTCTGGTGGAGCTCAACGGGATACGAGGGGAGCTGCAGACCACCACACCAGAAACCAACGCAGGCAATAATACAGCTGCTTTGGACAGtgacaagagagagaaaaatgacaGTTCAAGTGAAGATGAAATCAACCGCattaaaaaagccattaaaaaggactATGAGAACCGAGATTATGTTTGACGGAAAATTTTAAACTGTGCAAAGGCCTTAAAGGGGCTGTGCTTGAAATACTCGGAGAAAAAAAGCGGGCTGGGATTGCCCTCACACGGCACTCCCAGACcatagagacagagcgcatCGCGTCATACGCTTTGGGTTGGCAGCTTATAAAAACGTAATTTATGGGTTCTTTACATTGTTGGTAGTGAGtatcaccacacagcagcttttaggaaaggcaaggcagctttatttgtttagcacatttcagcaacagggccaTTCAGAGAGCTTTACCTAAAACGTTAggtatttttctgttgttttctagCAGACGGAATTGACGAGGATGCTCCTTCACGCaatacaagtcaatggagagcggCGCAGTGGGACTTAaatgcgctctgtctctattGCCCAATAAGTTAAATACTAAAAAGATTTAGTAAGTAaagacattttttgtcacagcCACATGCACTTAACATGCACGCACAGCTGGACCAGGTATCAGAACAAAGAGTAGAGAAGCTTGTGACtttattctctgctcaggaGGCCATTACTCAGTCCCTTTAAACTGTGCTTTGTTATTAGGGTTTCGGAAGTGtcagtttcttctccttcaAAATGTCTCCAAGTGTTTTTGAAAGTACCGGCTCATAACTCAAGCTTACTGCTGCATTGTTGGCATCTGCGAGGTGGTTGGTGCTAATTTCTTAAAATGGAAAACTACAATCATGCCGGTTTCTAAATGAGGGAACTCCCCTCTTGATGAAATGTAGTAGTTTCTAAAACCTCCGGACTTTTCTTTTAGGGATGTGACTTCTTGAATCTAAACAGCATTTACACTACTGAGAGGAACTGAGGCTTTGCGGTAGATAAAGTATCACATCTGCTTCTCTGGCTGTTGTGACAACGGGTGTGAAATGGGATACAAAGATTTAACTAAATCATGTATTTGGATAGTACAGTTTTACATGAGTGAAAGAAATAAGTACAAAGTATTTTGTAGACTTTAAAGTGTTGCTTAGAGTCTCATTAAAGTGTGCTGGTTCATATTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161156 lncRNA upstream 152987 32897747 ~ 32898018 (+) True G119640
TU161155 lncRNA upstream 153537 32897115 ~ 32897468 (+) True G119639
TU161154 lncRNA upstream 153957 32896731 ~ 32897048 (+) True G119638
TU161138 lncRNA upstream 210192 32839004 ~ 32840813 (+) True G119624
TU161136 lncRNA upstream 212917 32837303 ~ 32838088 (+) True G119623
XR_005640730.1 lncRNA downstream 93880 33163933 ~ 33166098 (+) False LOC120568463
TU161290 lncRNA downstream 111403 33181456 ~ 33185892 (+) True G119733
TU161305 lncRNA downstream 122534 33192587 ~ 33193199 (+) True G119744
TU161328 lncRNA downstream 198317 33268370 ~ 33269202 (+) True G119763
TU161341 lncRNA downstream 220277 33290330 ~ 33290580 (+) True G119767
XM_039815963.1 mRNA upstream 1924 32988817 ~ 33049081 (+) True tep1
XM_039815964.1 mRNA upstream 1924 32988817 ~ 33049081 (+) False tep1
XM_039815966.1 mRNA upstream 6048 32989790 ~ 33044957 (+) False tep1
XM_039815979.1 mRNA upstream 77266 32953276 ~ 32973739 (+) False parp2
XM_039814666.1 mRNA downstream 5730 33075783 ~ 33126800 (+) True LOC120567698
XM_039816011.1 mRNA downstream 56727 33126780 ~ 33180588 (+) True LOC120568455
XM_039816012.1 mRNA downstream 56727 33126780 ~ 33150292 (+) False LOC120568455
XM_039815267.1 mRNA downstream 203064 33273117 ~ 33285466 (+) True gk5
XM_039815269.1 mRNA downstream 222135 33292188 ~ 33298786 (+) True atp1b3a
XR_005640727.1 other upstream 3871 32989790 ~ 33047134 (+) False tep1
TU161084 other upstream 269534 32780988 ~ 32781471 (+) True G119585
TU161083 other upstream 275323 32775074 ~ 32775682 (+) True G119584
TU161081 other upstream 281153 32768707 ~ 32769852 (+) True G119582
XR_005640734.1 other upstream 595899 32452705 ~ 32455106 (+) False LOC120568569
TU161294 other downstream 93863 33163916 ~ 33166100 (+) True LOC120568463
TU161343 other downstream 234769 33304822 ~ 33307864 (+) True G119769
unassigned_transcript_564 other downstream 332198 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161565 other downstream 788489 33858542 ~ 33859847 (+) True G119957
TU161681 other downstream 885130 33955183 ~ 33957504 (+) True LOC120568585