RNA id: XM_039816000.1


Basic Information

Item Value
RNA id XM_039816000.1
length 2745
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120568447
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32594658 ~ 32600456 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATTGGTGATTATTTTAATCAAGCTTGTATTTTATAGTAATAATGTAGGCTTGAAGAAGGAGGTATGGTAGATTCGATTTGGGGTCCGTGCTACTACTATTTGTGTTAAAAAGTGGACTGGTGTTGGTGAGCTTTCTTAGGATTTATGAATGCAGTCATCAATATGGACATATGAGGGGAAGAAATTGGCCTACATTCAAGTGTGaatttgtattttaatattGTGTTTTCATCCGACTATCATTGTTGTGTTTTAAGAGATCTTGGCCTGCCATATAGCCAAGCTAATTTTACCCAATCCAGTCATTTTTAAGGCTGTACTGTTGTCTGCCAGACTAGTAAAGGTAAGTCACTTTTAAGTTTGAGCTGAAACACCTATGAGTATTGGCAAAGAAATGTTAAGGCCATCATCTCAGACTCCTGTTCCTCTCTTCCTTGTTGGGTGTAATCTTACTGCGTTCCTACTCGTGTACTTACGGTAGAGCCCTCGGCCACACGGAAGAAAAGGTTCCAGCTAGCTAGAAACAACACAGGGATGTAACATTTTCTAGTGCGTCGGTTGTTTTcgcatttttaataaatataattGCGCGAGGAGACATTTTTTATCATATATTGTTTTCAAATATTCCTTTGCATGAGTCGACATGGCGACGTGCATTCCCTTTCAAACCCAGCTATCCTCTATAATGGAGGTTTTGGTTAAAGCAGCAGTGACAGAGATATCCAAACTAGTCGATGACAAATGTGCGTTTTTGCATCTCGAAATATCCCGAAAGCAAAGCGAGAATGAGATGCTGAAAAGGAAATTAATAATGATGGAGAACAAAAATGCACAGCTGCAGCGCGGCTTTGAAAACTACATGGACAGAGGAACTGATGTGGGGAACTGTCCGCTTCCTACAGGAGATATTAAGTTTCCTGATATTGACGACGCCACTGTTTCGTTCACAATAAAAGAAGAGAGTCCAGATGAGATGCTGTGGATCAGTGATTCTGCTGGACCGATCGGTTCTGCTGTACATTACCGGACAGGTAATGCGCCGGAGAGCCAGCAGTTTGAAGAGGACCGCCCGCTAAACCATTCCGAGATCGCCGCAAGAAAATCATCCGAGTTCGGTGACTTGTATAACTCTGGTCAGCACGCGGGGGACATCGGCGGCCCTCAGTTCACCGTCAAGACCGAGAAGGAGGAGGACCGCTCCCGATTCAGCCAGGATGGATGCCAGCACGGCGCGGGGAAGCACGCTCAACTTGCTGGCGACTTTTCCGTGGACGAACGAGAGAATCAGCTCTGGACGTCCATAATCGAAGGGAATGACATCGATGCTGGCTTCCCTGACTTTTCCAGCGTGGTAGAGGAGTATTCCAACACGTTCCCGGACCATTCGGACGTTCACGTGGTTTCTAACGCCGCCAAGTCTGCCGGCGTGCAGCAGTTGTCCTCTCAGAGGCCGTGCAACGGGATCTACAGCACTGAGTATCAGAAGGATGTCCCACAGTTGTCCAGTTTTCAACCCAGAGCTCAGGCTGGCCTGCTGCAGCCGGACAGGCAGAAGGAACAAGCGTACTCGCAGCGAAACCCCTCGCATGTTGGACACGCGAGGCAGCCGGACGAACACACCGAGAGGGAGGGTGCGGCTGGAGAGAGACCGGCCGTCAGTCACTCGCACAACACCTTGACAACAGGCCGCTTCAAAGCGCTCTCGAGCATTTCGCGAGGCTACTCCTGCTCGCACTGCGGCAAGACGTTCGGCCGCCTGCACCAGTTCAAGCTGCACCAGCAGAGCCACAAGAGGAAGCGGGCGTTCTGGTGCACGGTGTGCGGGAAGAGCTTCCAGTGTTCGTCCCACCTCAGCATACACCACCGGACGCACACGGGCGAGAAGCCGTACGGCTGCGGGCAGTGCGGGAAGCGGTTCACACAGCAGAGCAGCCTGAGGGTCCACCAGCGCACGCACAGCGGGGAGCGGCCCTACAGCTGCTCGCTGTGCGGGAAAAGCTTCATCCTGATGCACCATCTGAAACGCCACAGAATCATTCACACATACAGCTGAGAGGGAGAGACGTCTACGGCAATGTTGCTCAGGTGAAAAAGATAAAAAGTGACCCCTTcaagaacacaccaaaaaagcCTGTGagctttttttgggggggggggggttgggatTTGTAAACTCGTTGCATTGCTCCCGGACTTTGTATAATAATGCATATTCTACTATGCAAAATCCATCGGGATGGATTTTAAGatgtttgcttctttttttttttaaatacttataACTATTAAAAACTGAATTGCAAcctcaaacaaaaatcacacaagTCAGTATTTTTAAAGGCACCTCCCAATGCTAGAAATCCCAAAAAACCAAGATCTGAAATGTGGAGTTATTATAAAGAAAAATATTCTACAAATGCCCTCTTACAGTTACCTGCATACTGAtcttcacagtttgtttttagcTTCTCAAGTGGAACTATGCCTTACTTCATCTGAGCACTGAAACTGTCGAAGCACAAGACACTCATTATTATCCCCATAAACTGTCCCCTTTACAGTCAGCAGAGGGCTTTCCATTCAGTGAAGAAGCACCTCTCAGGTTTATGTTGTGATGTCATAGTTGGTAAAAACCTGCCCGACCATGTTGTTCCCAGTGAAATATTTCCATAAAACGTATCCCCAAAATCCTTTACCCTCCTGTCTTATGATTTATATTAAAGGATCGTTTGAATCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161066 lncRNA downstream 614 32593374 ~ 32594044 (-) True G119567
TU161018 lncRNA downstream 23976 32569997 ~ 32570682 (-) True G119528
TU161013 lncRNA downstream 28267 32565972 ~ 32566391 (-) True G119523
TU160974 lncRNA downstream 140610 32438827 ~ 32454048 (-) True G119492
TU160959 lncRNA downstream 174769 32403526 ~ 32419889 (-) True G119479
TU161069 lncRNA upstream 49233 32649689 ~ 32649976 (-) True G119570
TU161099 lncRNA upstream 156754 32757210 ~ 32757652 (-) True G119590
TU161102 lncRNA upstream 160116 32760572 ~ 32760843 (-) True G119593
TU161093 lncRNA upstream 160513 32760969 ~ 32765076 (-) True fcer1gl
TU161096 lncRNA upstream 161991 32762447 ~ 32765151 (-) False fcer1gl
XM_039816152.1 mRNA downstream 38969 32538197 ~ 32555689 (-) False LOC120568564
XM_039816148.1 mRNA downstream 38969 32538197 ~ 32555689 (-) True LOC120568564
XM_039816151.1 mRNA downstream 41294 32538197 ~ 32553364 (-) False LOC120568564
XM_039816150.1 mRNA downstream 41332 32538197 ~ 32553326 (-) False LOC120568564
XM_039816158.1 mRNA downstream 56567 32524542 ~ 32538091 (-) True LOC120568566
XM_039815974.1 mRNA upstream 2687 32603143 ~ 32614898 (-) True LOC120568440
XM_039816003.1 mRNA upstream 17590 32618046 ~ 32623091 (-) True LOC120568450
XM_039816022.1 mRNA upstream 28986 32629442 ~ 32647388 (-) True si:dkeyp-68b7.12
XM_039815994.1 mRNA upstream 59079 32659535 ~ 32713327 (-) True tesk2
XM_039815996.1 mRNA upstream 124344 32724800 ~ 32754122 (-) False nectin4b
TU160944 other downstream 368298 32216502 ~ 32226360 (-) False G119465
TU160945 other downstream 368298 32218507 ~ 32226360 (-) True G119465
TU160835 other downstream 543219 32047477 ~ 32051439 (-) True G119379
TU160692 other downstream 1019468 31490252 ~ 31575190 (-) False zeb1a
TU160576 other downstream 1423048 31170382 ~ 31171610 (-) False G119169
TU161095 other upstream 161889 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 161889 32762345 ~ 32765076 (-) False fcer1gl
TU161088 other upstream 161991 32762447 ~ 32765151 (-) False fcer1gl
TU161089 other upstream 161991 32762447 ~ 32765151 (-) False fcer1gl
TU161092 other upstream 161991 32762447 ~ 32765151 (-) False fcer1gl

Expression Profile