RNA id: XM_039816015.1


Basic Information

Item Value
RNA id XM_039816015.1
length 2452
RNA type mRNA
GC content 0.47
exon number 8
gene id pex19
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32833516 ~ 32840858 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAACGTCACTTTTCAGAGACCTCTGCTCGGTGGGTGTTTGGTTTGGAGCTTGGAGAAGGTAACATCACGATGGCGTCGGGAACAGGAGAGCCGTCCACCGGACACGATGCCGAATTGGACGAATTATTGGACAGTGCGTTGGATGACTTTGACAAGACACCGGCGCCTCCAGCCCCTGAACCCGCAGCTGCTTCCTCCTCAGCCAACAGTGGTGCAGAGAAGCCGCCCCTGCTTGAAGACTGCAAACTGTTTGAGACTCTCTTCGAGGGGGACATGGCTACCCAAGCCAAGGAGGAGTGGGAGAAGGCCATGACTGAGCTGGCCCACGAGGAGCCAGAACTACTGCAGCACTTCCATAAACTGTCGGAGGCTGCAGGCAAAGTTGGCACGGACACCGAGTCCCAACAAGAATTCACTTCCTGTCTTAAAGAAACCCTTCGTGGCCTGGCTAAAAATgcagacaacctgcagTCCTCTGGACTAGCTGGAGACGACCTCGTCAAGGCTCTAGAAGGCCTGGGATTGGACGAGGGTGGCGAAGGAGGCGGCGAGGACGGAAACATCCTTCCCATCATGCAGTCAATCATGCAGAATCTCCTCTCGAAGGAAGTGCTTTATCCATCTCTCAAAGAGATCACTGCTAAGTACCCAGAATGGTTGGATGCCAATAAGCCAAGCCTTAGCCCAGACGACTACCAGCGCTATGAACAGCAGGCCAACATCATGGGAGAGATCTGTAAGCACTTTGAGAGGGAGGAACAGGGGGCAGCAGATAAAGAAGGGGTGTTCGAGAGCATCATGGAACTGATGCAAAAGCTGCAAGACCTGGGCCAACCACCCAAAGAGCTAGCAGGAGACGCGCCTCCGGGCTTTAACTTTGATATGGAGTCCCTCAATCTCCCAGGAGGCCCCGGGGCTGGGGCAGCCGAGCAGTGCTCCATCATGTGATGAGGTAGCGTTGCGGCCCATCAGAAGCAGTGGAGCCAGAGGGTCACTCCGCGTGCGTCAGCGGCAGGCAGGGAGTGAAGGAGTGGGAAGCAAAGGTCAGGCGGGGAGTGTGACCATGACCGTCAACACCGTTCTCACTCAAgtagaaggtgtgtgtgtggatacaGAAACAACTGGACGAAGCACCAAAACCAACAgaaaccacacccacacacacatcaaacccACTCTCTGCTCTCTAAAGTCACTGAATGCACGAATGAGAACATTTAAACATCTCTGCATTAGTTTGTCAACGGTTGCCGCAGATCCTTCCCGGTTTAGTTTTAACAGCATTCCTTTTAAAAAGAGCCACTGCGGttcttcatgttgttttttcaaTACTGTTTAGCCTCACGGTAAAATCCACAGAACCAATTCACGGGTATAAACAGTGCCTTTGCAAAATTACTTTAAGTTGTTATTTTaggttttaatattttgatatcatTCAGCTTAGCACTTAAGATTATAATTTTCAAATGGTGTGAATTTGCAGTATCATGACATCCCATGTTTACACCAAGTTAACGGTAATTATTTGGTAATTAATTAAACGCACACCTCTGTTTCTGTACAGGTTGTAGAGGATGTGACATAACAAGTTAACAAAAGgaactggagaaaaaaaaaagtagtgtaCATTTTGTAATTATTTATAATCTAATTAAAAAGACTAGAGAGGATTGAACACTAATGAGGAGTTCCCAGCGCCTACTCTAATTCAGTCAACTAATTTCCCCCATTTGCCCCTGTTCCCAGCTATCTGTTTGAAGTGATTGAAATGATGATTGCCGTATGCCTTTACTGTGGTAGCAGTGATCGTTATAGTGTAGCGTTACTGTGGGAAGTGCTTCCCTTGTGATTCTCCGTGTTTTTAATGTGCACAGTGTTTGGTATGGGATCCCTGCTATGAAAGGAAAACACGTGAGTGTTCAGGAGTGTTTACCTCCTGATAGCATGCTTGTATTGTGTACCCTCCATTAAAAGTACATCATGTTCCATCCAGAAAAGGCGGCAGGCAAAGCACCAAACATCACATTGTGTCCGCGAGGGGAGTAACCTATCGATAATGAATTAAAAGGTTAAAACATCACCAGCCTGATGACATGTTGGCTTTGGTTGGTGGGTTTGTTTACTCCAGCGGCCACTTGTCTCAGCTTCTACTGCCAGTGGACACATTTTTCTCGCTGTGACCATAGAGAGAGGTCTAGAAATCACACGACCATCAGCTCATCAATAAACTATAATAAAGGGGTACTGTGAAAGGATGCAGTCAGCCATGCACTGAAAAGAGATCAGATTTGCTGCTGTGGAGGTCGATAAATGGACGGGGGGGGGTTCGCTCTATTCAACTCTCAGGGCCGATGCACACGCCCAGAGCACCGTTTAAAAAATGCATCCTGTTATTTGACACCGTTTTGTTTTGTAAATACATCAAATAAAATAATGGTATAATGcaaa

Function

GO:

id name namespace
GO:0005777 peroxisome cellular_component

KEGG:

id description
K13337 PEX19; peroxin-19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161098 lncRNA downstream 68305 32762447 ~ 32765211 (-) False fcer1gl
TU161096 lncRNA downstream 68365 32762447 ~ 32765151 (-) False fcer1gl
TU161093 lncRNA downstream 68440 32760969 ~ 32765076 (-) True fcer1gl
TU161102 lncRNA downstream 72673 32760572 ~ 32760843 (-) True G119593
TU161099 lncRNA downstream 75864 32757210 ~ 32757652 (-) True G119590
TU161147 lncRNA upstream 8861 32849719 ~ 32865274 (-) False G119631
XR_005640731.1 lncRNA upstream 97843 32938701 ~ 32940160 (-) False LOC120568464
TU161164 lncRNA upstream 97858 32938716 ~ 32940130 (-) False LOC120568464
TU161165 lncRNA upstream 97858 32938716 ~ 32940130 (-) True LOC120568464
TU161209 lncRNA upstream 131817 32972675 ~ 32973003 (-) True G119686
XM_039814665.1 mRNA downstream 1007 32828364 ~ 32832509 (-) True LOC120567697
XM_039814664.1 mRNA downstream 6196 32815848 ~ 32827320 (-) True copa
XM_039815975.1 mRNA downstream 18026 32796097 ~ 32815490 (-) True ncstn
XM_039815997.1 mRNA downstream 39734 32768595 ~ 32793782 (-) False LOC120568446
XM_039815999.1 mRNA downstream 40011 32768595 ~ 32793505 (-) True LOC120568446
XM_039815973.1 mRNA upstream 25088 32865946 ~ 32886957 (-) True nfatc4
XM_039816002.1 mRNA upstream 104526 32945384 ~ 32952954 (-) True mettl17
XM_039816016.1 mRNA upstream 127038 32967896 ~ 32976355 (-) True si:ch211-284o19.8
XM_039816017.1 mRNA upstream 138456 32979314 ~ 32988559 (-) True zgc:66427
XM_039816009.1 mRNA upstream 340598 33181456 ~ 33191469 (-) True LOC120568453
TU161133 other downstream 1023 32828385 ~ 32832493 (-) False LOC120567697
TU161088 other downstream 68365 32762447 ~ 32765151 (-) False fcer1gl
TU161089 other downstream 68365 32762447 ~ 32765151 (-) False fcer1gl
TU161092 other downstream 68365 32762447 ~ 32765151 (-) False fcer1gl
TU161095 other downstream 68440 32762345 ~ 32765076 (-) False fcer1gl
TU161146 other upstream 8861 32849719 ~ 32852397 (-) True G119631
XR_005640728.1 other upstream 378866 33219724 ~ 33256936 (-) False LOC120568437
TU161606 other upstream 813444 33654302 ~ 33659276 (-) True G119989
unassigned_transcript_565 other upstream 1344158 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161838 other upstream 1387768 34228626 ~ 34229050 (-) True G120168

Expression Profile