RNA id: XM_039816025.1


Basic Information

Item Value
RNA id XM_039816025.1
length 662
RNA type mRNA
GC content 0.60
exon number 5
gene id LOC120568468
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 182862 ~ 211334 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTGTCTTCGGAGAGATctccgaggaggaggagcatCTCCGGTCTGGGGAGTTCAGAGAAGAGCGTCGCCGTCGACAACCCAAACTCGTCACCTTTCAAAGTGCCGGGTTTCTTCAGTAAACGTCTAAAAGGCTCCATCAAGAGGACCAAGAGTCAGACCAAACTAGACCGAAACACCAGCTTCAGACTCCCCTCGCTGAGGCCGGCTGACCCCGACAGATCTCGCGGGCTGCCCAAGCTGAAGGAGTCGAGCTCCCATGAGTCCTTGCTGAGCCCCGGCAGCGCGGTCGAGGCTCTGGACCTCAGCATGGAGGAGGACGTCTTCGTCAAACCTCTGCACAGCAGCATCCTGGGACAGGAGTTCTGCTTCGAGGACAACTGTCGTCGGGCGGAGAACCTGCTGCGTCTGTGGATCATCGAAGCCAAAGACCTGCCGCCCAAGAAGAAGTACTTCTGCGAGCTGTGCCTGGACGACGTGCTGTACGCGCGCACCACCAGCAAGCTGCGCCACGACAGCCTCTTCTGGGGCGAGTACTTCGACTTCTGCGGCCTGCCGGCCGTGCACAGCGTCACCGTGCACATCTACCGCGACGccgacaagaagaagaagaaggacaaGAACAACTACGTGGGCCTGCACGCCGACGCCGAGCAAGGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148899 lncRNA upstream 7505 174572 ~ 175357 (+) False LOC120568467
TU148904 lncRNA upstream 31007 21855 ~ 151855 (+) True G110668
TU148908 lncRNA upstream 31826 90965 ~ 151036 (+) True G110672
TU148918 lncRNA upstream 51001 76407 ~ 131861 (+) True G110682
TU148930 lncRNA upstream 73129 98792 ~ 109733 (+) False G110688
XR_005640600.1 lncRNA downstream 18755 230089 ~ 234490 (+) True LOC120567641
TU148970 lncRNA downstream 33746 245080 ~ 246544 (+) True G110711
TU148959 lncRNA downstream 55806 267140 ~ 288259 (+) True G110706
TU148958 lncRNA downstream 76270 287604 ~ 381279 (+) True G110705
TU148993 lncRNA downstream 157004 368338 ~ 372419 (+) True G110726
XM_039816024.1 mRNA upstream 7490 146242 ~ 175372 (+) True LOC120568467
XM_039814730.1 mRNA downstream 101674 313008 ~ 313994 (+) True LOC120567748
XM_039816879.1 mRNA downstream 119017 330351 ~ 331330 (+) True LOC120569058
XM_039814764.1 mRNA downstream 144724 356058 ~ 357039 (+) True LOC120567754
XM_039816040.1 mRNA downstream 152419 363753 ~ 364184 (+) True LOC120568476
XM_039814703.1 mRNA downstream 435439 646773 ~ 648472 (+) True LOC120567728
TU148917 other upstream 8874 158706 ~ 173988 (+) False LOC120568467
TU148952 other upstream 26252 146254 ~ 156610 (+) False LOC120568467
TU148914 other upstream 109638 72687 ~ 73224 (+) True G110678
TU149056 other downstream 312116 523450 ~ 525151 (+) True G110768
TU149084 other downstream 400779 612113 ~ 615996 (+) True G110789
TU149103 other downstream 526490 737824 ~ 745038 (+) False dnajc1
TU149101 other downstream 533835 745169 ~ 754429 (+) False dnajc1
TU149102 other downstream 533835 745169 ~ 754429 (+) False dnajc1

Expression Profile