RNA id: XM_039816033.1


Basic Information

Item Value
RNA id XM_039816033.1
length 6320
RNA type mRNA
GC content 0.45
exon number 21
gene id LOC120568471
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15311382 ~ 15328062 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACATGTTGGTGACAGGATGTGCTTTGGGCGACTGTCcgtacagtctatggtctgtaGCAACAGAACAATTTCGGCACTGTTTTTTCTCATGTGCTCGTTCGTGGAATTTCTTAAGAGGCTTTAGTGTGTTATTAAAGAAAACAGTGGACAAAGCGGTTTCCCTTCCCAGTCTCATCTCATGACAAACAGCTTTCTCCAGCAGCTAACTCTCTCTGTGTGGGAGGGCGGTCCATGATGATGAGCCTGCTAGCAGCCTTCGAACAGGCTAGCTGAGTGAGTGGAACTAGCGTGCTAATAGTTACCCAAGTGTGCAGTTTATTTTCGGGACAGCACGATGAAGAACATCATGAAGTATTATAGACCTATTCCACTACAGCATATTGACAACACCACTGGAAGCTAGCGGCGTCTCTTCTCCACCACAGCGGTTGGTTGACATCGCTCATCTGATAATTACCGGGCTCTGAAAATAGCGGATTTGTTGGCACGACCATGCCTCCCAGGCCCTCTTCGGGAGAACTATGGGGGATGCACTTGATGCCCCCCAGCATACTGGTCGACTGCCTTCTGCCAAATGGCATGCTTCTCACGTTGGAATGCCTCCGGGAAGCCACGCTGATCACAGTCAAGCATGAGCTTTTCAAAGAGGCCAGGAAGTACCCTCTTTATAATCTGCTGCAGGAGGAGAGCTCCTACATCTTTGTCAGTGTCACCCAAGAGGCAGAGCGGGAGGAGTTTTACGATGAGACCAGGAGGTTGTGCGATCTTAGGCTCTTCCAGGCCTTCCTTAAAGTCATTGAGCCAGTTGGAAACAGGGAAGAGAAAATTCTCAACAGAGAGATAGGTTTTGCAATTGGAATGCCTATATGTGAGTTTGATTTGGTGAAAGACTCAGAagtgcaggacttcagaaggaacattttaaatgtttgcaaAGAGGCTGTGGACCTTAGAGACAGTAACGGACCCCACAGCAGAGCTTTGTATGTATATCCTCCCAATGTAGAATCCTGTGCAGAACTTCCCAGGCACATCTATAACAAGCTAGATAAAGGTCAAATCATTGTGGTCATATGGGTTATTGTGTCACCCAGCAATGACAAGCAGAAGTATACCCTGAAGATCAACCATGACTATGTGCCAGAGCAGGTGATTGCCGAAGCCATCCGTAAGAAGACGCGTAGCATGCTGCTCTCCCAGGAGCAGTTAAAGATGTGTGTACAGGAGTATCAGGGAAAGTACATTCTCAAAGTGTGTGGCTGTGACGAGTACTTGCTGGAGAAATACCCTCTGAGTCAGTACAagTATGTGCGCAGCTGTATCATGCTGGGACGGATGCCTAACTTGATGCTAATGGCAAAAGACAGCCTGTATTCCCAGCTGCCCATGGACAACTTCACCATGCCGTCATATGCAAGGCGAATATCCACAGCAACACCCTACATGAATGGGGAAACAGCCACCAAGTCTCTCTGGACTATCAATGGAACACTGAGGATCAGGATACTGTGCGCTACTTACGTCAATGTCAACATCCGAGACATTGACAAGATCTACGTCAGGACCGGAATATACCACGGTGGAGAGCAGTTGTGTGACAATGTCAACACCCAGCGTGTGCCCTGCTCGAACCCCAGATGGAACGAGTGGCTGAATTACGACATGTACATTCCAGACATCCCCTGTGCTGCCCGACTCTGCCTCTCCATCTGCTCTgtgaaaggaaggaagggagcTAAAGAGGAGCACTGTCCTCTCGCCTGGGGCAACATCAACCTGTTTGACTACACCCACACACTAGTAGCAGGGAAGATGGCTCTTAACCTATGGCCTGTCCCACATGGCTTAGAAGACCTGCTCAACCCTATCGGCGTCACAGGCTCCAACCCCAACAAGGAAACCCCTTGTCTGGAGCTGGAGTTTGACCATTTCAGTTGCCCTGTCAAGTACCCTGATATGACCATCATTGAGGAACACGCAAACTGGAATATATCCAGAGAGCTTGGCTTTAATTACTGCCACACCGGTTTGAGTAACAGACTGGCACGTGACAACCCCCTGACTGACGTCGACAATGAGCAGCTACGCCAGGTGTGTAACAGAGACCCGCTGTCTGAAATCACTGAGCAGGAGAAAGACTTTCTATGGAGGCACagGCAACACTGTGTAAACATGCCAGAGATCCTTCCCAAGATCCTCCTGGCTGTGAAGTGGAACTCCAGAGATGAGATTGCACAGatGTATTGCCTCCTGAAGGACTGGCCTGCTATCAAGCCAGAACAAGCCATGGAGTTGCTGGATTGCAACTTCCCTGATCCAATGATCAGAGAGTTTGCCGTAAAGTGCCTTGAGAAATACTTAACTGATGACAAACTCTCACAGTACCTCATTCAACTGGTTCAGGTTCTGAAGTATGAGCAGTACCTTGACAACCCACTTGCACGCTTCCTGCTGAAAAGAGCATTAACCAATCAGAGGATAGGACATTTCTTCTTCTGGCATTTAAAGTCAGAGATGCACAACAAGACAGTGAGCCAGCGGTTTGGCCTGCTGCTAGAGTCGTACTGCCGGGCCTGTGGCATGTATCTGAAGCACCTGAGCAGACAGGTGGAGGCCATGGAGAAACTCATCAATCTCACTGACCTCCTCAAACAGGAGAAAAAAGATGAGGCACAGAAGGTTCAAATGAAGTTTCTGGTGGAGCAGATGAGAAGGCCTGATTACATGGATGCCCTGCAGAGCTTTACCTCCCCACTGAATCCTGCACATCAGCTGGGAAACCTCCGCCTGGAAGAATGCAGGATGATGTCATCAGCCAAGCGACCTCTATGGCTTAACTGGGAAAACCCAGATATGATGTCAGAGCTGCTCTTTCAGAACAACGAAATCATCTTCAAAAATGGAGATGATCTGAGGCAGGACATGCTGACGCTGCAGATCATTAGGATAATGGAGAACATCTGGCAGAACCAAGGCCTTGATCTCAGgaTGCTGCCATATGGTTGTCTGTCAATCGGTGACTGTGTGGGTTTGATTGAGGTGGTGAGGAACTCTCACACAATCATGCAGATACAGTGTAAAGGAGGCCTAAAGGGGGCACTGCAGTTCAACAGCCACACTCTGCATCAGTGGCTTAAGGATAAGAACAAGGGAGAGATGTACGACCAGGCCATCGATCTGTTCACGCGGTCGTGTGCAGGCTACTGTGTAGCCACATTTATCCTGGGCATAGGGGACAGACACAATAGCAACATTATGGTCAAAGATGATGGACagCTGTTCCACATAGACTTTGGCCATTTCCTCGACCACAAAAAGAAGAAGTTTGGGTACAAGAGAGAACGTGTGCCCTTTGTGCTCACACAGGACTTCTTGATCGTTATTAGCAAAGGAACTCAAGAGTGCACCAAAACAAGGGAGTTTGAAAGGTTCCAGGAGATGTGTTACAAGGCGTACCTGGCAATCCGGCAGCATGCCAACCTCTTCATCAACCTCTTCTCCATGATGCTGGGCTCAGGGATGCCCGAGCTGCAGTCATTTGACGACATTGCTTACATCAGAAAGACCCTAGCTTTGGACAAGACGGAGCAGGAGGCCTTGGACTACTTCATGAAGCAGATGAACGACGCTCACCACGGCGGCTGGACTACCAAGATGGACTGGATCTTCCACACAATCCGCCAGCATGCCATGAACTGAAATGACGACTAATGCATAAAGAAAGGAGTAAAGGACTGTAGCACACTAAGAATCAAAAGAATAGTTAGAAGCGAGCGAGGTATTTTCCCAAACCCACTAAGGCCTGGTTAATACTTTTGCCAGCGTGTGACTCTGAAACCTGCCAGCGCACCACAAAAAAGGTGTGCTCAGAAGGGCATAATTCAGGGACATATTGACTAAATGCTCCTGATTCTACCAGTTTCTGAATTTCTTATCCCTGCACTATGAACTTCAGAAGGAAGAGTGGAGTTATATTTCATCAGTCTTCTTTATAGGAACTAAACGAGTGTAATGGACCTTGACATCGTTGGCCTTCTTTGtgtaaacaaacttttttttattattcctttAAGTACATCTACAACCATCAGCATTAAGAAAGAAACATCATGAAGTTGTGTACCATGAGCACAGTTGGCTTTTTCTAATGATGAACTGACAGAGTGTAACTGCTTTATTTCCACTAACTATTTTAAACTGATGAAGACGGGGGAGATATTGGCGCACACAGCCAGACCAGCTGACACAGAATGAAAGGGACAATGACAAGCCTGGTGTGTGCCTATTAAATCATGATTACCCCTTACAATCATAAAAAACAATCACCAACACTCTTACTACAGGACTGACAGAGGACGTGTTGTCGTGTTGTTAAACACTAGCATTTAACGCTTTTAAAGCATCTGAAATAACAACTTATTTGTAGCCTACTGACGTGTACTCAGTTTAGAAATCATGCCAGATAACTGACTTTTGTACAGCAGTATATCCATAGACTTGTATGCATTCAGTGCACATATTCCTTTTTGAGTCTATTTTCTACTGAGCCAAAGTACTAGATGTTTAACCCCACTACTCAGCAGTCttattgtaaaaaagaaaaaaagtcactaCTATTCCAAGTCTCTCATGTGTACTCGTAGCACTGATCTctgcagtatttttttttgttttgtttcgtCTATCAGTATTATCCTGTGTCCAATGTTGAGGCTCAAATGTCCGTCACCCCCCCCGCCCCACACACTGTCGGAACACAGACTGACTAGAGAAAACCTTTCTGACGGTCAGCTGTATGAGATGTTATGAATTGGTCGGTTATTCAGCAGATAAAGGCAAGAATTGAAGGGGAAAATGATGTGCAGTGTTCCTTTTGTGTTGTGCGCTGTTACACTATGCAAGTTGTGATTCTGATATGtactgcaacaacaacaaaaagttgaTGTCAGAGTATGGCAGAGAGAAAAATGCATCTCCCCCGACATGCTCACACAGACACGTGTGCAGTGAACAGAAAGATGCTGCACTGTAACGGGATCGTCTACTTCTTCCCAACAAAAAGAACTGTGAGAAATGCCTTTGGACCCTACCTTTTGCTTCTCCTTACCAGGTTTATATTTGGAGCTTCAATCTAAGCCATCTGTAAAATGTTTGATTTGTTGAGTTTTGCTCCTGTCCTCTTGTTCTCTAACACTAATACTAAGATCATTTAAGAGACTCTCTTCCTCACATATGCCATATGGTACCAGATCATGACCTCCAGGTAAAGAAAAGTAACAGAAGTTTAATTGTTTTTCCAACCTTTCAAGtgtcttcttccctcctctttcctATGATTGTCAACCTTATGTGTGGAAAAATAGTCTTTGCAGGTTTGCTCACTGCACCGACACATACGTAAGATGTCAGTAAATGTTCCAGCTTTACCAAATGATACACAACAGGGCGGTTTCCTGGACACTCAAGTCCGTCTGAAAGTCcaatttttgttttctgtacaTTGGTATGGACTTAAAAATGATCAGGAAACCGATCCTGCTGAGATGCATGTGCTTTTGTACAGGCTACAGAGCAGTGGGCTGGACCCAAACTCAGAAAACTAGACCTCATATACTTTATGGAAGAACTCCCTAAATGATGCTATTTCCCTTTGTACTTACTGTTTTCTGTTTGTCACGCTGCATTATGCATGAGGTCCTCGAATAtctactttttttgttttgtttgacctgatgatgttTACTTGAATTTGATGTATAGAAAGGACCTTGTTACTTGTGTAAGGTACAACAAAGTCACCATGAAGGTAACAGATACTGATAACTGCTACTACATGTGCAAATGCTTTCCTTGAACAACCACAGAGgtaatatatttttgtatttttaaatgtaagcaAACTCCTATATGTATGCtaaccaaaaaaagaaaagaaaaaaaaaggcggAATCATGCATAACATGCACCATCCTCATAGAAAACCCAGTAGACAGCTTCTAGTTGTTGAAACGATATGAATGACAAAGCAGAGGAGGATTTTTGAATGAAGGACAGCGACTTAATGCTGTTAGTCAGTCTTCACATCAAGTGGGATCTTTTGCCCTAAGTGGAAGTCTGTAAGCACAATAAGGAGGAAGAAGCTACCCTGCATGATTCAAAAAAGAACTATACTTAGTTATATCCATctgtgtatatatctatatcaTAATTATCAAATCAAATACTTGTTTTAGTCATCCTCATATGACCATGTCTGATAAAGAAACTGTATGCATTCATTTATTGtactgttaaataaaaacatttctccCTATCTAAA

Function

GO: NA

KEGG:

id description
K00922 PIK3CA_B_D; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154900 lncRNA downstream 45158 15264520 ~ 15266224 (-) True G114836
TU154790 lncRNA downstream 229402 15076141 ~ 15081980 (-) True G114752
TU154756 lncRNA downstream 308337 15001144 ~ 15003045 (-) True G114733
XR_005640751.1 lncRNA downstream 352979 14954578 ~ 14958403 (-) True LOC120568695
XR_005640836.1 lncRNA downstream 528910 14780276 ~ 14782472 (-) True LOC120569096
XR_005640790.1 lncRNA upstream 59416 15387478 ~ 15393259 (-) True LOC120568803
TU154969 lncRNA upstream 79315 15407377 ~ 15407627 (-) True G114883
TU155136 lncRNA upstream 392957 15721019 ~ 15727229 (-) True G115017
TU155169 lncRNA upstream 406992 15735054 ~ 15735281 (-) True G115041
TU155170 lncRNA upstream 407418 15735480 ~ 15735895 (-) True G115042
XM_039814512.1 mRNA downstream 6772 15290082 ~ 15304610 (-) False mfsd8l2
XM_039814511.1 mRNA downstream 6772 15290082 ~ 15304610 (-) True mfsd8l2
XM_039814513.1 mRNA downstream 6772 15290082 ~ 15304610 (-) False mfsd8l2
XM_039816697.1 mRNA downstream 93900 15211287 ~ 15217482 (-) True LOC120568939
XM_039816696.1 mRNA downstream 112153 15194894 ~ 15199229 (-) True LOC120568937
XM_039816037.1 mRNA upstream 1202 15329264 ~ 15330964 (-) True LOC120568473
XM_039816394.1 mRNA upstream 81442 15409504 ~ 15414489 (-) True eif4a2
XM_039816567.1 mRNA upstream 88963 15417025 ~ 15418189 (-) True setd9
XM_039816775.1 mRNA upstream 116410 15444472 ~ 15451865 (-) True LOC120568994
XM_039816424.1 mRNA upstream 124377 15452439 ~ 15462599 (-) False LOC120568743
XR_005640598.1 other downstream 6772 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other downstream 6772 15290186 ~ 15304610 (-) False mfsd8l2
TU154687 other downstream 514338 14795918 ~ 14797044 (-) True G114680
TU154602 other downstream 695610 14613613 ~ 14615772 (-) False LOC120568687
TU153973 other downstream 2222819 13084561 ~ 13088563 (-) True G114152
XR_005640842.1 other upstream 83100 15411162 ~ 15411347 (-) True LOC120569139
XR_005640843.1 other upstream 83601 15411663 ~ 15411840 (-) True LOC120569141
XR_005640844.1 other upstream 84331 15412393 ~ 15412467 (-) True LOC120569142
XR_005640845.1 other upstream 84924 15412986 ~ 15413059 (-) True LOC120569143
TU155326 other upstream 816098 16144160 ~ 16148121 (-) True G115164

Expression Profile