RNA id: XM_039816041.1


Basic Information

Item Value
RNA id XM_039816041.1
length 1521
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC120568477
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 523269 ~ 531734 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTCATCAGGAAGCTGCTCAAGTGAGTAGTTCTCCGTCGACACGTTGGACCGTTAGAAGAAACTATGAAAGACTGAGATCAGCAGCATGGATCAGTCTGAGAACAAGGAAACCTCTCCATGTGGGGAACAGGACAGCCAGACAACAGCTCAGAGGACCATCCCGAAACTGGACTCTGATGAAGCTGAAGCAGAACCGAACAGTGTCTCTAAGAATGTGTGGATCAAATTGACAGGCCCTGCAGCAGAATCACTGGCGCAGGCTCTCTATGGGCCCACTGTTGTAGTTTTGCAGGAAAACAAGGGAGAtagaagaggagcagaagaggaAACAGCAGAAGAAGACGACGCAGCAATACGACTAGAACTAGAGGCTGaaggaggaggtgcagaagtaactggaagaggaggaaaaacaGCAATAGTCAAAACCGTGTCAGTGCCATCAACAAGGACTGTTGTCGCAGGAAGAGCCCAAGCTGGGAAACGCATCAAAGTGCTAAAAACATACAGGATTGTCCTGCTGGGAAAAACTCGAGCTGGGAAAAGCAGCCTAGCAAATACCATTTTTGGAGACGATGTGTTCAAGATAAACCATACCTCCATCTGTGGAACAAGTGAATGTCAAGCAGGGTCAAAATCTGTTCATGGAAGAAGACTAACTGTGGTCGACACTTCTGGTTTCTTTGACACAGATAGACCTGAGCAGCAGCTGAAGAGTGAGATAGTAAGGTGCATCACAGAGTGCGCTCCAGGGCCTCATGCTTTTTTCATTGTTCTTAAAGTGGAGAAATTCACTAAGGAGGAGCAGGCTGTCATCACtaaaatatgtcaatatttCTCAGAGGAAGCTTTAAAGTATGCTGCTGTTGTCTTCACTCATGGTGACCAGCTCCCAGAAGGAATGACAATTGATCAGTTTGTTGATCAGAATAAATGTCTCAGTGATCTGGTGAAGAAGTGCGGCGGCCGATGCCATGTTGTTGATAATAAATACTGGAAAAACAACCAACAGGATGAATACAGAAGCAACAAGTTTCAGGTGGCAGAGCTGCTCAACACAACAGACAAGATAGTAATGGAAAACAAAGGAGGCTGCTACACTAACAAGATGCTACAAACAGTGTGGagtgaaaaagaaagagagaacaaCAGAACCTCTGGAGGAAAAATGCCACAAGGACACCCCAGAAATAAGGCGAACAAAAGTGTCTCAAAGAATGTGTGGCTAAAACTAACAGGCTCTGTAGCAGAATCACTGCTGGAGTCCTTCTGTGGGCCCGCTGTTGTAGTTTTGCAGCAAAGTGGTGGGTTAACAAAAGGAGCAGCAGAAGGAATAGGAGGTGAAGCTACAGaaacaaaaggagaaaaagCAGGAGGAAAAGCTTTTAAAGAAGAAGTAGATAtagaaacagaagaagaaaaagtagatatagaaacagaaaaagtagaaaGAGAATGTACCTGTAAGATTTACGGCAGTCCAACTCGTGTGAATGGGAAGTATCAGTATTTACTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149286 lncRNA downstream 126078 375313 ~ 397191 (-) True G110898
TU149283 lncRNA downstream 150578 267135 ~ 372691 (-) True G110895
TU149285 lncRNA downstream 233106 289796 ~ 290163 (-) False adhfe1
TU149288 lncRNA downstream 258038 264405 ~ 265231 (-) False adhfe1
TU149287 lncRNA downstream 262321 260603 ~ 260948 (-) True G110899
XR_005640620.1 lncRNA upstream 16601 548335 ~ 548652 (-) True LOC120567842
TU149394 lncRNA upstream 146084 677818 ~ 767571 (-) True G110946
TU149419 lncRNA upstream 224187 755921 ~ 796589 (-) False G110964
TU149420 lncRNA upstream 224187 755921 ~ 756638 (-) True G110964
TU149407 lncRNA upstream 274528 806262 ~ 808340 (-) True G110958
XM_039815875.1 mRNA downstream 10352 458451 ~ 512917 (-) True LOC120568381
XM_039815876.1 mRNA downstream 47081 458451 ~ 476188 (-) False LOC120568381
XM_039815877.1 mRNA downstream 70188 435287 ~ 453081 (-) True LOC120568382
XM_039815881.1 mRNA downstream 90086 419901 ~ 433183 (-) False LOC120568383
XM_039815880.1 mRNA downstream 90090 419901 ~ 433179 (-) False LOC120568383
XM_039816326.1 mRNA upstream 2974 534708 ~ 545516 (-) False LOC120568671
XM_039816325.1 mRNA upstream 2974 534708 ~ 544285 (-) True LOC120568671
XM_039815538.1 mRNA upstream 62173 593907 ~ 623130 (-) False amph
XM_039815534.1 mRNA upstream 62173 593907 ~ 623130 (-) False amph
XM_039815543.1 mRNA upstream 62173 593907 ~ 623130 (-) False amph
TU149268 other downstream 140604 375712 ~ 382665 (-) True G110889
TU149269 other downstream 141653 375712 ~ 381616 (-) False G110889
TU149279 other downstream 234929 266959 ~ 288340 (-) False adhfe1
TU149280 other downstream 234929 266959 ~ 288340 (-) False adhfe1
TU149262 other downstream 280183 235257 ~ 243086 (-) False LOC120567755
TU149406 other upstream 222529 754263 ~ 766300 (-) True G110957
TU149470 other upstream 317448 849182 ~ 849492 (-) True G110988
TU149680 other upstream 473337 1005071 ~ 1005925 (-) True G111136
TU149674 other upstream 477160 1008894 ~ 1010100 (-) True G111134
TU149667 other upstream 481085 1012819 ~ 1021435 (-) False G111133

Expression Profile