RNA id: XM_039816055.1


Basic Information

Item Value
RNA id XM_039816055.1
length 1831
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC120568496
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6803908 ~ 6867658 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGGTCACTGATCTCTCTGCACATTCATCCAGCTCAGTGGGGGATACAGAACATCACCGGCTTCTTCTCGTTTTTTAAagcgttttttttccttcacatTCATGgatttaaaacaatattcaGAGCCCCTTAGCGGGATGAAAGAGTCCAAAGTGGAGTTTAAATGAAGTCCGGagtcctgtttttatttattagccGCGTTTCTCCTGTTAGCACCTGAATGTGACCGGGGCTTCTACCTGAGgagtaaagatgaaaagtttgcTCTTCGTCACCTTGTGTTTCTCGACGTGTCCGCTCATGGTTGTCGGACGCCATCCAACCTGTAACTTCCTGTTGGAGGTGGAGAGAGACCAGGCGGAGTGTCTGAGGCGGCTGAGGGAGGAGGACGCTGCCGGCAGCCATAAAGAGTCGGGATGCAAAGGAGTGTGGGACAACATTGCATGCTGGAAGCAAACTGAGATCGGAGAGACCGTCACCATCCCCTGTCCTCGAGTCCTCAAGACTGTATTCGGCAGAAATGGGAACATCAGCAGGAACTGCACGTCAGCGGGATGGTCGGACGTTTTCCCAAACATCACCAGCGCGTGTGGGTCGGACACCAGCCAGGACAAGCTGGTCTTCTACGTGGTCGTGCAGACATTGTACACTCTGGGTCACAGTCTATCTTTGATTGCCCTCACCACAGGGAGCGCCATCCTCTGTCTGTTCCGGAAGCTCCACTGCACCAGGAACTACATCCACCTCaacctcttcttctccttcatcctGAGAGCTGTGGCTGTGTTGGTGAAAGACGACATCCTCTTCAACCGGACCTCGCAGTGCTCCAACCAGCCATCACTGGTGGGATGTAAGGCCAGCCTGGTGTTTTTCCAGTACTTCATCATGGCCAACTTCTTTTGGCTGCTGGTGGAGGGTCTGTACCTCCACACTCTGCTGGTTGTCATCTTCTCCGAGAACAGACACTTTATCGTCTACATGTTCATTGGCTGGGGAATCCCGACAGtatttgtctctgtgtgggtgATGACCAGGATTTATCTAGAGGACACGGGATGCTGGGAGAGAAATGACAACCCCACACCCAACTGGGTGATCAACGGACCAATTGGATTCTCCATTATGGTGAACTTTATCCTGTTCATCAGCATCATTCGAATCTTGATTCAGAAGCTGAGGTGTCCTGATGTGGGTGGCAACGACCAATCACAATACAGGAGGTTGGCCAAATCCACTCTCCTGCTGATCCCTCTGTTTGGGATCCACTATGTGGTCTTCGTTTCTCTCAGTGAATCCATCGCAGAGGATTATAAAATATTCTTTGACCTGGCCCTCGGATCCTTTCAGGGTCTGGTGGTGGCCATTCTGTACTGTTTTCTAAACAGTGAgGTTCAAGGCGAGCTAAAGAGAAAGTGGCGGAGTATGTGTCTGAACTGCCATCTGAGCAGAGATCACCACTTCAACAGCACCGTCGCCTCCAGGAACGGTTCAGAGCACATGGTACAGTTTCACCGCAACTCCCGAACCCAGTCCATCCTGCAGTCAGAGACCACAGTGCTGTGAGGACCTGAGGGatccttggaaaaaaaaaaaactgtctccAGGTTGACCTGGGTCGAATACAGTTTTACAAAATGATTTTAACACAAAGTTGAGGTGAAATACACGAGTGGGACCTCTACATCGTTTCAGAGCAGATTTTGGTTTTAACTTTACAAATCTCTGCAAGCCttcaaaatgtactttaagtggACCTAAAGCTGTCCTGATCCATCCAATGAgggtgtgtttgtatttgctGCCAAGAAAGaacatttttttcagtgtt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004999 vasoactive intestinal polypeptide receptor activity molecular_function

KEGG:

id description
K04590 VIPR2; vasoactive intestinal peptide receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151788 lncRNA downstream 1754 6783945 ~ 6802154 (-) True G112579
TU151795 lncRNA downstream 68928 6690670 ~ 6734980 (-) True G112581
TU151804 lncRNA downstream 77141 6726411 ~ 6726767 (-) True G112590
TU151791 lncRNA downstream 105869 6695610 ~ 6698039 (-) False zmynd11
TU151792 lncRNA downstream 105869 6695610 ~ 6698039 (-) False zmynd11
TU151851 lncRNA upstream 7007 6874665 ~ 6949132 (-) False G112617
TU151852 lncRNA upstream 72457 6940115 ~ 6949132 (-) False G112617
TU151848 lncRNA upstream 76564 6944222 ~ 6949132 (-) False G112617
TU151849 lncRNA upstream 77547 6945205 ~ 6949132 (-) True G112617
TU151850 lncRNA upstream 78228 6945886 ~ 6949132 (-) False G112617
XM_039815265.1 mRNA downstream 28215 6773520 ~ 6775693 (-) True LOC120568072
XM_039815262.1 mRNA downstream 32512 6749460 ~ 6771396 (-) True LOC120568068
XM_039815264.1 mRNA downstream 35010 6765048 ~ 6768898 (-) True LOC120568070
XM_039815261.1 mRNA downstream 39858 6761022 ~ 6764050 (-) True LOC120568067
XM_039815266.1 mRNA downstream 43772 6757854 ~ 6760136 (-) True LOC120568073
XM_039816030.1 mRNA upstream 88782 6956440 ~ 6990122 (-) True si:ch211-267e7.3
XM_039816029.1 mRNA upstream 88782 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816028.1 mRNA upstream 88782 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816027.1 mRNA upstream 88782 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816778.1 mRNA upstream 140463 7008121 ~ 7015870 (-) True LOC120568998
unassigned_transcript_534 other downstream 576124 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 577162 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 582811 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 583374 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 583954 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 1619809 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 1912794 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 2004776 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 2005752 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 2024273 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile