RNA id: XM_039816073.1


Basic Information

Item Value
RNA id XM_039816073.1
length 4060
RNA type mRNA
GC content 0.55
exon number 17
gene id LOC120568504
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36624077 ~ 36710812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCAGGCGTGAGTGCACGGGAGCGAGCACTGCTGCTGCCGCTGTGGATTACACCGGCCCGGGAAGAGCAGGAGAGATAGGAGCGCCGCTATCCGACAGACCTGACAAGTAACGTTAGTTAACCACTTTCACAGAGTGGTCGGTCCGCACAAGAGTTGGCGAGAATTGAAACTCATCTCAGGAGCATTGGAGCGCGttttccccctttttctccACGGAGCGTCCCACACCAGTAAAGAAGGAAGCCATGCTAGTCGACCTCTTCCTCTTGCGGTGAGCTGCGTGGGGGACAGTCGGGAGGCGTCATGGCGGAGCTGCCGATCGCCCCGGGCGAGGTCTACATCGAGGTGGAGTACGACTACGAGTACAAGGCCAAGGACCGCTTCATCACCATCCACCAGGGGGAGTGCTACATGCTGGTCAAGAAGACCAACGAGGACTGGTGGCAGGtgaagaaggaggaggggaCCAAGGCTTTCTACGTGCCCGCGCAGTATGTCCGCGAAGTTCGCAAAGCCCTCAtgcccccccccaaacacaccCCGCATCCTCCCGCTGCCGCTGGCAACACGGCTCCACCGAGTGGGGGGGCGCTCTGGGTAAAGCCAGCCAATCTGGAGCTGGGGCTCAAGAACCGCTCCACCGAGAACCTTAACCGACACGAGTCCAGCTATCGGCGCTCCCCCTCGGCACACACGGCCCAGTCTGGCTACTTCAGCCCCCCCAGTCAGCGCAGGAACAGTACCCACCACCAGCGCCCCGGCAGTCCCGCCGACCACAGCCGGCCTCGTCCCGTCGTCCTGGTCCCCGGCGGAGCCCTCCAGCCTCCTCAAAAAGGAGGCACTCTACCCCGCGCCCGGGCGCGATCCCCGGACATGGTCCGCGCCCCGCTGGACGTGGACGGCACCCACCATTGTGACTCTGCGGGCGAGGAGAGACGCACCAACGACTCGGAGTCAGGAGACGAGCTGAGCGGCAGCTCCACTGAACATCTCCAGACGGTATCTTCGTCAGGCCATGGCCGGCCCGAGTCTCCTGTTTACACCAACCTCCAGGAGTTGAAGATTACCACGAGTAACCTGCCCCCTTTTCCCTCCGGCTCCCCGCTCCACGTGCTGGGCGACTGGGAGACCTACAAGGACCCGACAGGCAGGCACTTCTACTACAACCGCAGCACCCAGGAGAGGACCTGGAAGCCACCCCGGGCCAGGGACGGCAGCTCTGGGAGCTCCAGAGGAGAGAGCCACAGCGCAGGAGAGAACTCCGAGTGGTTGAAACACGCCGATGAGCAGGGCCGACCGTATTACTACAGTGCAGATGGTTCCAGGTCCGAATGGGAGCTGCCAAAGTACAACCACTCCCCTCCCCAGCCGTCTGGGGACGCTCTGAAGAGTCGCAGCCTGGACAGGAAGCACGTGGAGCCCATCGTCCTGACCAAGTGGAGACACAGCGTCTACGTCCAAGACCCTAACGACAAGGATGCACCACTGGGCCCCAAGCCCCCCTCCCCCGACTCTGACTCCTGCCCTTCGTCTCCCAAGCCCCCCGCCTCTCCGTCTGAAAAGTGCGGCGTTCTGAATGTGACAAAGATCACCGAGCACGGCAAGAAAGTACGGAAGAACTGGACTTCTTCCTGGACAGTGCTCCAAGGATCCACGCTGCTATTTGCCAAAGGCCAAGGAGGCGGGACCAGCTGGTTCGGAGGCCCTCAGTCCAAACCAGAGTTCACCGTGGATCTGCGCGGCGGCTCGGTGGAATGGGCTTCCAAGGACAAGTCCAGCAAGAAGCACGTTGTAGAGGTGAAGACTCGGCAGGGCACAGAGCTGCTGATCCAGTCAGACAAAGACGACGTTGTCAGCGACTGGTACAGAGCGCTGCAGGACACCATCAGCACCCATgccTGGGAGTCTGATGAGGCCATTGAAGAGGACCTGCCGGAGTCGCCCGGTGCGGAGAAACACGACAAGGAGAAAGACCACAGAGACTCAAAGAAAGGTCGAGCCATGAAGACCTCCACTAGCATGGACAACTCGGAAAACAAGAAGACCAAACACAAGCTGAAGAAGTTCCTGACCCGCCGTCCCACCCTGCAGGCAGTCCGAGACAAGGGCTACATCAAAGATCAGGTGTTCGGCTGCAGTCTGTCCAGTTTGTGTCAGAGGGAGAACGTCACAGTGCCAATCTTTGTCAAGATGTGCATCGACCACGTGGAGAACAACGGTCTGTGTATAGACGGGCTGTACAGAGTTAGTGGGAACCTGGCTATCATACAAAAACTACGTTTTGCTGTCAATCACGatgAGAAGGTCAACCTGACGGACGACAAGTGGGAGGACATCCACGTGACCACTGGAGCGTTGAAGATGTACTTCAGAGAGCTGCCCGAGCCTCTCTTCACCTACGCTCTCTTCCATGACTTTGTCAGCGCCATCAAGGTTCCAGACTACAAGCAACGAGTTCAGTCCATCAAAGATCTGATCAAACAGCTGCCCAAACCCAACCACGACACCATGCAGGCCCTCTTCAAACACCTCCGGAAGGTGATCGACCACGGGGAGGAGAACCGGATGACCACCCAGAGCGTGGCCATCGTGTTCGGCCCCACGCTGCTGCGGCCTGAAATGGAGACCTGGAACATTGCGGTCCACATGGTCTACCAGAACCAGATAGTGGAGCTCATACTGCTGGAGTACGAGAACATTTTCGGCAGGTAGAAAGAGATGCCGGAGGATgagcctttttttcttcttccactctctctccctcccaaaCGCAGAGCTCTTCCTAACCCAGCATGGCCCTGCCAAAGACGGCCcggcctggcctggcctggctTGGCTTGGCCTGGTCCGGCCCGGGCCAGCTTCTCTTCATCTCAAACCAACCCGCGGTCTCTGGCTTCTCCATTCGTACGACCTCCGGACCAAAGCCACTCCAATAAGTCCAGAACCAAAACGTAGAGGTCACTAACTAGCAAACAAAACACGTTTAGACCCTTTGCACTTTTTCAGCATCTCATTTTTCCTCCTGCAGCTGCATTTGTGCCCCTTTACTGCAAAGGCGACATTGTCCTGTTCCTACACTGGATTCCTAAAACTAATACACAGTTCCAGACAAGCCTCTGCTACTGCACAGACTCCCTGAGaccaaagcagcagcagcagcagcagcagcagaagaagagTGGGCCTCAGTAGCCTCTGTTCCAGAGGAAGCGTCAGTATTGGAGGTTGGacaatgtactgtactgtatgtcctatATGTACCTACTGTATATGACCCTGTAAAGACTCATCACTCCTGTATGAACTACACTGGTTGAACCAACAGAAGTAACCAAACTACTGTGCTTGGCTTTAGATGTTTAGACGCTAAGAGAAGTAAGTAGAAGGAGGGATGATTCTTTGACCATTTTCTGTCCTTTCCATACCGCTCTCCCTTTCACCTTCTCTTTattaatgtaaatattttgcTCCCCTTCTACCTCTTTCCATCTCCCTCCGAATACTTCTCCTTCCTTTTCTTCCTGTAATTCCTGAAATACCGGACCAGGGTCCTCTGAACACATAAAGCGGTTTCAgcctgtaatatatatatatctgcacGTCACCTTCTCCATTCGGCGTTAAGAACAAATCAGCTCGCAGCAGTCAGAACTTGAAAGAAGCAAACGGTACTCTGCTCTGTCTTTCCTCGACTCGTGGATATTAAAAGTGAAGGCAGGCGGCCTTTAATCATGACTCCGTTGATACGTGTACAGTGTTTAATGCGCGTGATGTGGGTGAggtggatggatgaatggatttaATGACTTTATTGTACAAATGGTAAATaaaaagtatgtatgtatgcctgGAATGTTAAACGATATGATACGAGGGAGAAATCACTATTCCGTGATCATTGTGTAACCGACAGATGAAATAAAAGTTATGAACTGGGGATGTGGAGCTTTACCTGCGTCTCAGGTGAATGAAAGATGGTTGAATGTAAACTTTGGAGAGTGACTGTCTGCTTTATCAAACTGGAATAAAGACCTCTAATAAGAGAGATTTCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162483 lncRNA upstream 65346 36411744 ~ 36558732 (+) True G120720
TU162477 lncRNA upstream 219313 36404553 ~ 36404765 (+) True G120714
TU162439 lncRNA upstream 402308 36221419 ~ 36221770 (+) True G120678
XR_005640756.1 lncRNA upstream 417837 36204551 ~ 36206241 (+) True LOC120568724
TU162436 lncRNA upstream 435520 36188333 ~ 36188558 (+) True G120675
TU162586 lncRNA downstream 108751 36819563 ~ 36819774 (+) True G120796
TU162604 lncRNA downstream 152981 36863793 ~ 36865529 (+) False LOC120568212
XR_005640683.1 lncRNA downstream 152987 36863799 ~ 36866140 (+) True LOC120568212
XR_005640684.1 lncRNA downstream 160539 36871351 ~ 36875394 (+) True LOC120568213
TU162630 lncRNA downstream 249119 36959931 ~ 36971438 (+) False LOC120568208
XM_039816061.1 mRNA upstream 3482 36588654 ~ 36620596 (+) True LOC120568503
XM_039814682.1 mRNA upstream 40208 36565761 ~ 36583870 (+) True LOC120567713
XM_039816721.1 mRNA upstream 160416 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA upstream 160416 36449037 ~ 36463662 (+) False pold3
XM_039816699.1 mRNA upstream 982045 35594878 ~ 35642033 (+) True LOC120568940
XM_039816078.1 mRNA downstream 26336 36737148 ~ 36747668 (+) True LOC120568506
XM_039815568.1 mRNA downstream 133199 36844011 ~ 36844650 (+) True LOC120568209
XM_039815569.1 mRNA downstream 144384 36855196 ~ 36855843 (+) True LOC120568211
XM_039815567.1 mRNA downstream 169106 36879918 ~ 37087443 (+) True LOC120568208
XM_039815045.1 mRNA downstream 498493 37209305 ~ 37230711 (+) True LOC120567940
TU162480 other upstream 217389 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 218305 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 374551 36249445 ~ 36249527 (+) True trnal-caa_4
unassigned_transcript_580 other upstream 381474 36242522 ~ 36242604 (+) True trnal-uaa_9
unassigned_transcript_579 other upstream 381809 36242187 ~ 36242269 (+) True trnal-caa_3
TU162632 other downstream 300187 37010999 ~ 37018790 (+) False LOC120568208
TU162730 other downstream 592082 37302894 ~ 37306014 (+) True G120914
TU162816 other downstream 1301065 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 1486229 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 2044872 38755684 ~ 38755931 (+) True G121058

Expression Profile