RNA id: XM_039816078.1


Basic Information

Item Value
RNA id XM_039816078.1
length 3352
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120568506
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36737148 ~ 36747668 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGCTGAAGGTCGGTCTCACATTAAATGTCTGATCGAGTGAATCTGATTCTCACTAAAATACTCAACGGCATCAGCCACCAGGGAACTGATTCCAGTGTTGCTCGAACATGGATCCAGATCCAGATTTCGATCCAGATCCAGATCCAGATCCAGATCTCACCATCGTCCTTCTGGGAAACACTGGAGTCGGTAAAAGTGCTTCAGGAAACACCATCCTGGGATACCAGGCCTTCGAGTCAGGACTTTCCCTCAGGTCACTGACAACTGAAATCTCTGAAAAACCTGGAACTGTGTTTGGGAAACAGATCTCAGTGATCGACACTCCGGGAATTTTAGGACATGAGGGGGAGATTCAGACCGAGTGTCAGCGTGTCCTGCAGTCCTCCATACCTTGTCTGTTCCTGGTTGTTATCAGCGTTGGACGGTTCACAGAAGAACAAGAGAAAGCTCTAAAGGCAACCATCCCAGTTCTCGGGCAGGATGGACCAGAAAAGAGTTATATACTTTTCACAAACGGGGACGCCTTGAAGAAGATCACAGTGGAGGATTTCATctttgaagaagaagaagaagaagaaggtccACTTCCAGACATCGTTAGAAGCTTTGCAGGGAGGTATCATCTCTTCAATAATGTAAATGGAGGACAGGAACAAGGACCAGAACAAGGACAGGAACAAGTCCGAGATCTGCTGATAAAGTCCGGTCACCTTCAAGGATCTCATCTACCACCAGCTGCTGGTTTTGGAGAGTCCGTCCGGTTGGAGGGAACGAGGATCGTGCTGCTCGGTCTTCCTGGAGGAGGGAAGAGTTCATCAGGAAACACCATCCTGGGAGCAGATCTGTTTAAGTCAGACTTGGACTTTAATTCAGTCAGTACTGAGACTGTTTCAAAGTCAGCAGAGGTAGAGGGACGCAGGGTCACGGTGGTCGACACTCCAGGGTTTACTGATGAagttctgtctcctgaacagcTGTATAACGAGATTATGAAGTCGCTAGTCGACGCCAGTCCGGGACCACATGCCTTTGTTATTGTGGTGAAGATTGGCAGGATGTCCAGAGTCGACGCTGACCTGCTTAAGATGCTACCAGAACTATTTGGCAATGAGGCCCTGAACTACACCATGTTGGTGTTCACTCATGGAGACGAGCTGGGAGGTCAGTCCATCGATCAGATGATCCGGTCCAGCAGCTGTGTGTCAGCCCTGGTCTCCATGTGTTCTGGGAGATTTTGTGTGTTTGACAACAAAGGAAGAAAAAGCAGAAGGCAAGTTCGGAACTTCATGAGTAAAATCAACGAGATGGTCTCAGCCAACGGAGGAAAGCACTGCACGTCCGACATGTTCAGGATGGCCAACACGTTCATCGAAGAAGCTGAGCGAACTGGGACAGCTGGAGGCGATCAGGCCCCGAGAGAAGCTGCACAGAGACGAATACAGCCTTTTGTTGCCCGGAGCTGGTGGAGGGTCTTTTGCTGTTTCACAGCATGCTGTTGTTCAGCCAGTGGATCGTCAGATGATGAACGTCAGGCTCTCCTGCCCAACCATTAAAGGTCATCTGAGAGACCGGTACAGGTTAAAGGGCTGTCCACATAGAATGataactgtaaatatatattttatccagggtttcccgcagaaaATTTGTTAAGGTGGTATGCTGTGAACACAGTGGTGCCTGCCTGTAACAGAGGAGGGGACtgacaacctcagcctgtcagtcaggcAATAGGGCATAGTGAACACAGTGGTGCCTGCCTGTGCAGAGGAAGCCCATACCGTGACAGCTTTCACCCGTTATATACGCTGTCTGTCTGCGTGGAGTTCTGAAAAGTGTAAACACGCTTGCAACCGCTTTAccggcattgccgtgactcactgtgactttaacAAAGTCAACGTTGTCCTCGGTAGTACcgacgttattttttatttttaatgcgtTCTGCAGAGAAGGGAGACTAGCGTTGGTCACGGTTTGGAAcgaaagggagaaaacaggacagagtaacacCGGATATCGTTCATATACATTTTTTCATGACCTAGATAAGGTGGCATGCCCATCTTGCTCAGGTGGCCTCCTAAGCTGCAACATGTTAACATAATATTTAAATCAATGTTAACATTTTGGCGTTTTTTTTAGATGTTTGTTTTGacgctttttccaaagttttttgtattttttttccccgaAATGTTATATTTCACTATAATATTAATCAGTATGATAAACATTAATTCTTActtatattcaaatatatttgacatttttgttgcttttttttacatttttgtgggGACATTTTTGATGTTGTTTTTAAGTATTTGGTGCTATTTTAACATTCTGGGAGCAACTTTGGGTTCAGTGTTTTGCTCATGGAGCctttgacatgtggccggaGGAGCCTACGATGGAACCATCACCCTTGTGGTTAAGGGCCCACCCACTCTAcctctgagccacagccacccctGACGCTAGCTACCTAAAGCTagcaaaaatggctcgctagctaAAACTGCTGGCAGTTAAAACTTCTCTTAAtacaatacatccatgaataaaactcACATCCCAGTTAGTTATGCTGTTAAATGCTTCACAATACAGCACTATAGTCTAAACATCACACTCAGTGTAAAGGAGTCTGTTAGGTtataaaaagataaaactatgcttatgtattatgttttaaataataaattgtatgctgcagtcaggttatgaaaataggaatggaATCTAGAATGACTAGCCTACTAAGGTAAAAACAGCTGgttatttctctccccctctcttcctgtctttggtTAAATTGATTAGGTTTAAACCAACTATTAACATATGAAAAGAAACGTCTCTTTGAGTCTCCAACCTCCTGGTGCCAAGTctgggttagaacaaaggaaatgcaaactctgtaaacttgaatataatcaacacttccatgataatcaaccttagtctgtgacctggagtaaacctaaatgaagaggtgtgtccttatcctgagaAATAGGAATAAATGTGGGAGCAGGAGAAGGATTCGGGGCCACAAGCCTTGGACCCGACAAGGGAACAGGTTCTGTGGTCCGCTGGTTGcactgtattgttttgtcatgtcgcatggctgctgaCTGTTCTTCTGTAACTCCCCAAGGAGAGCATGAgatcagtccgctgtcagctgcagtgtaacatttgtgttttgactgtcgttttcatgttgttttattaaaccatttTGCATAACTTTTAATATTCGACCCTAAcctctccttcgtcctcagaaatcgaaGAACACGTCAATTGAAAATAATCTTAcaacctgcagtagcctact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162483 lncRNA upstream 178416 36411744 ~ 36558732 (+) True G120720
TU162477 lncRNA upstream 332383 36404553 ~ 36404765 (+) True G120714
TU162439 lncRNA upstream 515378 36221419 ~ 36221770 (+) True G120678
XR_005640756.1 lncRNA upstream 530907 36204551 ~ 36206241 (+) True LOC120568724
TU162436 lncRNA upstream 548590 36188333 ~ 36188558 (+) True G120675
TU162586 lncRNA downstream 71895 36819563 ~ 36819774 (+) True G120796
TU162604 lncRNA downstream 116125 36863793 ~ 36865529 (+) False LOC120568212
XR_005640683.1 lncRNA downstream 116131 36863799 ~ 36866140 (+) True LOC120568212
XR_005640684.1 lncRNA downstream 123683 36871351 ~ 36875394 (+) True LOC120568213
TU162630 lncRNA downstream 212263 36959931 ~ 36971438 (+) False LOC120568208
XM_039816062.1 mRNA upstream 26336 36624077 ~ 36710812 (+) True LOC120568504
XM_039816064.1 mRNA upstream 26336 36624077 ~ 36710812 (+) False LOC120568504
XM_039816067.1 mRNA upstream 26336 36624078 ~ 36710812 (+) False LOC120568504
XM_039816065.1 mRNA upstream 26336 36624078 ~ 36710812 (+) False LOC120568504
XM_039816070.1 mRNA upstream 26336 36624078 ~ 36710812 (+) False LOC120568504
XM_039815568.1 mRNA downstream 96343 36844011 ~ 36844650 (+) True LOC120568209
XM_039815569.1 mRNA downstream 107528 36855196 ~ 36855843 (+) True LOC120568211
XM_039815567.1 mRNA downstream 132250 36879918 ~ 37087443 (+) True LOC120568208
XM_039815045.1 mRNA downstream 461637 37209305 ~ 37230711 (+) True LOC120567940
XM_039814685.1 mRNA downstream 850146 37597814 ~ 37598425 (+) True LOC120567716
TU162480 other upstream 330459 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 331375 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 487621 36249445 ~ 36249527 (+) True trnal-caa_4
unassigned_transcript_580 other upstream 494544 36242522 ~ 36242604 (+) True trnal-uaa_9
unassigned_transcript_579 other upstream 494879 36242187 ~ 36242269 (+) True trnal-caa_3
TU162632 other downstream 263331 37010999 ~ 37018790 (+) False LOC120568208
TU162730 other downstream 555226 37302894 ~ 37306014 (+) True G120914
TU162816 other downstream 1264209 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 1449373 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 2008016 38755684 ~ 38755931 (+) True G121058

Expression Profile