RNA id: XM_039816081.1


Basic Information

Item Value
RNA id XM_039816081.1
length 3612
RNA type mRNA
GC content 0.42
exon number 10
gene id asic1c
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21303361 ~ 21322484 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTCAAAGTGATTACCTCTGGGAGTGAAGCCGTCGCTTACATCTGCAATTATCACGTGCATTTATCTATTGATGAAGGACTGGCGATGGTtacgcttgatggtttttgttaATGGAGTGATTCAGCTGTTTTTCTCATAAATGAATCATTATGTAAATCAATTGTACCTCCCCCAAGGAgctcagtttctttttttttttaatctttctgGCAAATAATTATCAAGCCTGAACAGTGGGACAGCTGCACATTAGGACTCTAGTCGCTGCTACCTGGAATCTCTGGTACATAAAcctggagatggttgtggagaAAGTCAGTGTGTGAATTGGGCATGTCTAGGGTGGGCTACTAAGAAACCGCATTTGGTAAAGAAGCGCCTGCCTTGACACAGGCAATTATGTTTGAAGCACCCACATCCGGAGCAGTCGCCCTGGAGCCACACAAAGACAATGATGCCCAAGAGACTTGTCTCCAAAACACTGAGTCCAGCTCGCTTAAACCAACATTAAAAGAGATGATGGTGGATTTCATAATGAGGCTCAAGATCCATGGTGTGAAGTATGTCTTCTCTTCGGACAAGTCTAAACTGCAGCGAGTCATCTGGATCATGGCCTTCTTCGTTTGTGTCAGTCTCCTGTGCACCTGGTCCTGGAATCGAATCATCTACCTGCTGTCCTACCCTGCCGTCACGAAGATCTACGTGGTATGGGCTCACAACATGTCCTTCCCAGCTGTTACTTTCtgcaataaaaatgtgttccGGGTATCCTCTCTGACCAAGGATGACCTGTATCACAGCGGCTACTGGATGGACCTCATGTATCCTAATCACACAGTGATGGAGAGGAGCCTGTCTATCATTAAGGACAGCCACAAGCAGGGTCTCCTGAGCCTGCTGGACTTTGACAACTACACCCCACCCCCTGATTACAGCATCAACACCACCGAGATGATGGGACGCCTCGGCCACCAGTTGGAGGACATGCTGCTGGTGTGCAGGTTCCGAGGGGAAACCTGCACCTACAAAAGCTTCAGCACTatttacacacgCTACGGAAAATGCTACACATTCAACTCTGGATTAGACGGCAACCCTTTGTTGACCACGTTAAAAGGTGGCACAGGGAACGGCTTGGAGATCATGTTGGATATTCAGCAGGATGAATATCTGCCTGTTTGGGGAGAGACAGATGAAACCTCCTACGAAGCAGGCATCAAGGTTCAGATCCACAGCCAGGACGAGCCGCCCTTCATTGACCAACTGGGATTTGGTGTGGCCCCTGGTTTTCAAACTTTTGTGTCATGTCAGCAGCAACTGCTTCAGTACCTCCCTCCGCCTTGGGGAGATTGCAAGTCTACTCCCATAGACTCTGAATACTTCTCGACGTACAGCATCACCGCCTGCCGCATTGACTGTGAAACCCGGTACCTGCTGGAGAACTGCAACTGCAGGATGGTTCACATGCCTGGGACCTCAACAGTTTGCACACCTGAGCAGTACAAAGACTGTGCTGACCCAGCTTTAGACTTTTTGGTAGAGAAAGACAACGATTACTGTGTCTGTAAGACCCCCTGCAACATGACTCGCTATGGCAAGGAGCTGTCCATGGTTAAGATCCCCAGTAAGGCATCTGCTAAGTATCTGGCTAAGAAAttcaacaaaactgagcaaTATATTGGGGAAAATATATTGGTCATGGACATCTTCTTTGAAGCTCTGAATTATGAGAAGATTGAGCAGAAGAAGGCCTATGAAATTGCAGGGCTTCTCGGTGACATTGGAGGTCAGATGGGGCTGTTTATCGGAGCCAGTGTCTTAACAATACTCGAAATATTTGACTACCTATATGAGGTGATTAAGGATAAGGTTTTGGGCTACTTCATACGCAAGAAACGACCACAGCGTTGTCAGAGCGACAATCTGAGCACCTGTGACACCCTCCGGAGTCACTCGGACAGTCTCGGATTCACGCCGAACATGTTACCTCGTCACCCGACTCTAGGCAACTTTGAAGAGTTTGCTTGTTGACAACATAAAGTAGGGGTTGGGGGTGGGGTGGCACATCTGGGGACTTGACGGCAAACTGTGAAATAATTAATGTATTTAACGGTTGAGTGTATAACTCAAAAACATATACATGTAATAGAGTTTATCAATGCCTGAATAGAAATAGAGTACtatcatcagaaaaaaagagaccacTTCCAAAACAGAACTCAGGTTTAACTGCCATGTCAAGGCATCAGTGTTAATTTATTCATGTTTCATTTCGtggatttgtttttcttatGCAGTCATTTTAGAGTTATACAATCAGTGATGAGAAATGGGtccaaaaaaggctttctgaccTGTGATGAGATGTAGTACTGTTGTGCAGGTTTTGCTGTACatcaattaaaagaaaaaaagaaaaaaaagagaatacaTGTGGATTGGTATGTGTAGCATTGCAGTTTCTCAACAGTGTTACGTCTCCAGCATCTAACTAATGCTGTATTGAGTGACCTTATACTGTCACCAGTTTGAACAGGAGAGCCTTTTCAGAAATCTACTTGACTTCAATAAGCCGATTGTTGGATAAAAGAGCTGCTCATACCTGAATCAAAACACTAGACTGGTGTTTAATGTTGCCTTTTGCTGCTGTGAGGCTTTGGATTGTCTCATAAATTAGACGACTGTGctaaatcaatttaaaaacgGAAAAGGAACTTAATTTTTTGGATATATGCAAGTATCTAGTTTTGATTTACGTGGATGGCGGTAACCGCTGAATTGGATGGGTTTGTTAACTTAAGTCACTTTTTACACACAGTAAGGGtaaaaaaggccaaaaaaggCTGTTGATTGTATCTTTATTTAGCTGACGTGTCAATCTTCATTGTTTTCCCATTTTGTGGAATAGTGTTGCTGTGCTGACTGTCACAAAAAAATGCTAGCATGCAGCTTGCTGCAGAAATtctcctttatttatttacattgaaTTCACTAGAAGAGGAACAATCAGGTTTTcctttttgcctttttaataATTCTCAATTCTTTTTTCATTACTGTGTCTTAAAGGTGTTCATCAGCACAATCCCCTGTGATAGTAATCTATTCTCTATTGAACATACGTAGACTTTAAAAGGCTTGTTGGTGACATTCCTAGACTTGAGAGAAATttgtaaatacaaataaaatcaaATGCCATTAAGAAATTCTATACTGCTCGTGTGAGACATTTGTCAAAAATATATGtatcaatatatcgatatatatatatagagagagagataagtgTTTTTTCATCTGTTCTTACACCAAAAGGAATTTGGATTTTCTATCTGGGTGGGCCGTAAGTGTCTTTGAGTTTCTGGTGATTACAGTATAATGTGACTGACAACTAAATAGACTTTATTAGATACAAGAGAATTGCCTCAAAACATCAAAACCACCACGCACCTCAGCCCCATTCAGTTCAAATGATTTATGACAGAAATGCATTGTACAATTTTACCATTGTatccttttattattattccagaAGATGTAATAAGTCACAAATAACAGTTTGTGATGTATAAATGATTAAGTATAATAAACTCTATATTTACCCATCTTA

Function

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157296 lncRNA downstream 3279 21297415 ~ 21300082 (-) True G116692
TU157207 lncRNA downstream 93588 21208742 ~ 21209773 (-) True G116651
TU157135 lncRNA downstream 195643 21107514 ~ 21107718 (-) True G116582
TU157133 lncRNA downstream 242121 21058592 ~ 21061240 (-) True G116580
TU157105 lncRNA downstream 307821 20988324 ~ 20995540 (-) True tmie
TU157354 lncRNA upstream 270255 21592739 ~ 21595306 (-) True G116743
TU157375 lncRNA upstream 336195 21658679 ~ 21660467 (-) True G116758
TU157461 lncRNA upstream 488378 21810862 ~ 21811146 (-) True G116832
TU157550 lncRNA upstream 675310 21997794 ~ 22002858 (-) True G116893
TU157587 lncRNA upstream 855809 22178293 ~ 22178534 (-) True G116922
XM_039816562.1 mRNA downstream 18422 21273384 ~ 21284939 (-) True atg9b
XM_039816561.1 mRNA downstream 18422 21274741 ~ 21284939 (-) False atg9b
XM_039816564.1 mRNA downstream 34985 21213666 ~ 21268376 (-) True LOC120568841
XM_039815361.1 mRNA downstream 101734 21197293 ~ 21201627 (-) True c11h1orf35
XM_039816859.1 mRNA downstream 152175 21133002 ~ 21151186 (-) True wnt9a
XM_039815358.1 mRNA upstream 126953 21449437 ~ 21571616 (-) False agap3
XM_039815359.1 mRNA upstream 126953 21449437 ~ 21528245 (-) False agap3
XM_039815357.1 mRNA upstream 126953 21449437 ~ 21526461 (-) True agap3
XM_039815360.1 mRNA upstream 173656 21496140 ~ 21571620 (-) False agap3
XM_039816670.1 mRNA upstream 344255 21666739 ~ 21704105 (-) True sntg1
TU157096 other downstream 292792 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 1507652 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 1837981 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 2080635 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 2367884 18931974 ~ 18935477 (-) True LOC120568972
TU157655 other upstream 939514 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 940639 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 2107882 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 2146136 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 2545468 23867952 ~ 23868025 (-) True trnai-aau_23

Expression Profile