RNA id: XM_039816082.1


Basic Information

Item Value
RNA id XM_039816082.1
length 555
RNA type mRNA
GC content 0.45
exon number 2
gene id zgc:92591
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21428019 ~ 21428679 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTGAGCCAGAGAAAGAGGATACTTATTCCTAAAGTACTTGATAGAGCGTTTGACGTAGCCTACGTAATATTGTCAAAGTTAATAGTTGACATAGTTTGAAGAATGACGAATGATATATCGAAAAAGAAGGGGAAGGTTGCAGGTGAGAAAAGGGGGAAAAGAAAGGCCAAAAGAAGAGAGACTTACGCGATGTACATCTATAAAGTGTTGAAACAGGTTCATCCGGACACGGGCATTTCCAGCAGAGCCATGAGCATCATGAACTCCTTCGTGAATGACTTATTTGAAAGGATTGCCACAGAGGCGTCCCGGCTGGCTCAGTACAATAAACGCTCCACCATCACCAGCAGAGAGGTGCAAACTGCAGTGAGACTGCTGTTGCCCGGGGAGCTGGCTAAACACGCCGTGTCTGAGGGAACCAAAGCTGTCACCAAGTACACCAGCTCCAAATGAAGACTTGAACACACTCGGAAGTTGTTGTGACAAGGGTTTCAACCCTGTGCATCCGTTTTGAAACCTGGTTGATTTCaataaacgtagcaaaagaaaCCTA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11252 H2B; histone H2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157251 lncRNA upstream 101756 21270751 ~ 21326263 (+) True G116657
TU157170 lncRNA upstream 183626 21243641 ~ 21244393 (+) True G116616
TU157136 lncRNA upstream 294007 21129608 ~ 21134012 (+) True G116583
TU157070 lncRNA upstream 397523 21021631 ~ 21030496 (+) True G116538
TU157061 lncRNA upstream 399037 21008040 ~ 21028982 (+) True G116529
TU157330 lncRNA downstream 25651 21454330 ~ 21500394 (+) True G116723
TU157363 lncRNA downstream 185421 21614100 ~ 21662470 (+) True G116746
TU157416 lncRNA downstream 405787 21834466 ~ 21838752 (+) True G116794
TU157417 lncRNA downstream 405787 21834466 ~ 21836347 (+) False G116794
TU157508 lncRNA downstream 506840 21935519 ~ 22020278 (+) True G116857
XM_039816532.1 mRNA upstream 129686 21291706 ~ 21298333 (+) True cdk5
XM_039816563.1 mRNA upstream 137518 21285152 ~ 21290501 (+) True abcb8
XM_039815362.1 mRNA upstream 219335 21200717 ~ 21208684 (+) True guk1a
XM_039815364.1 mRNA upstream 219335 21201685 ~ 21208684 (+) False guk1a
XM_039815365.1 mRNA upstream 232262 21192298 ~ 21195757 (+) True arf1
XM_039816085.1 mRNA downstream 6288 21434967 ~ 21439933 (+) False asb10
XM_039816084.1 mRNA downstream 6289 21434968 ~ 21439933 (+) False asb10
XM_039816086.1 mRNA downstream 6979 21435658 ~ 21439933 (+) True asb10
XM_039814880.1 mRNA downstream 13081 21441760 ~ 21444125 (+) True gbx1
XM_039815842.1 mRNA downstream 152601 21581280 ~ 21595237 (+) True rb1cc1
TU157037 other upstream 512731 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1052386 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 1911074 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2409293 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 2753957 18672562 ~ 18674062 (+) False LOC120568691
XR_005640709.1 other downstream 442274 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 1179385 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 1212831 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 2248400 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 2422200 23850879 ~ 23855157 (+) True G117319

Expression Profile