RNA id: XM_039816085.1


Basic Information

Item Value
RNA id XM_039816085.1
length 2043
RNA type mRNA
GC content 0.49
exon number 5
gene id asb10
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21434967 ~ 21439933 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGAACAGCCGGCAGGCACATAGTGGACATTAGCCAGAGAGAAGGATAcaacaacagagacagagagacaggcctTTTTAGACGGTCTCTCTCACTCAACCAATTTTGTCTGCAAGAGGCAAACCATTCAGCATGTCGCGAGGCAGCTTTGTCTTCACATCCATGGCCTTGCGCTCCCTTGAACTTGATGAGGACATGCTTGAGAGACACAAGTACAAGAGGCAGCTGACCTCCCATCACTTCAACAGCTATATGCTGAAGAAGGAGATCAGGGACAGGACACCGCTGAGGTCCAGCACTGCCACGCCACCAACTATCTGCCAAGATGTGGTCGTCCAGAACGCTCTGTATACAGGAGACCTGGAGGCATTGCAGCACCTCTTTCCTAGAGGATCCACAGTGAACCTCATCATCGAGCCACAGGGAGGGGACATGCGCTGGGTTGCCACAGGGGAAGGACTGTGGTCACTGAGTTATGAGCAGGAGCTGACCACACCACTTCACATCACAGCTGGCCGAGGCTTCACGGAGTGTCTGAGACTCCTGCTGCAGCGTGGGGCCAATGTGGACCTGGCACCCGGAGGCACCACTGCTCTGCATGAGTCCTGTGAAAACTGCCAGCCAGAGTGTACCAAACTGCTGCTGATCCATGGCGCCAACGCTAACGCTGTCACTGAAGACGGCCTTATGCCTTTGCACTTTTGTACAAGCCCCGAATCTGTTGAATGTGCCAAGTATCTCCTTCAGTACGGTGCAGCAATCAATGGTCGCACTCTAGATGAAGGTGACACTCCCCTACATGTGGCAGCCAGCAATGGCCTCCCGGAACACACTGAGCTCTACCTGCGCTATGGAGCTGCTGTGGACAAACGGAACAATGAGGGTGTCACGCCCCTGAACGCTGCTTGTTCAGAACCCCAGGAGGTGCAGGAGCTTGAACGTTACTTCAAGGTGTGCCAGAAGCTGCTGGCGGCTGGGGCCAACGTCCACGCTATGGACCAGGACAAACACACTGCTTTGCACAAGGCCTGTAAGAATGTAAATCCAGACATAGTGGATCTGCTGCTGGCTAACGGTGCCTGCGTTAACGACATGGGCTACGGTGGCGAAGCCCCCATGCACAACATCCTGAAGGTGGTGTGCTACAAGGTTTCCCATCACCCTGAAAGGATCGTCCGTGCGCTGCTCAACCATGGTTCTATTCGGGTGTGGCCTGGAGCTCTGCCCAAGGTTTTGAAGCACTGCTGTGGATCTCCACGCACCATCGAAGTTCTTCTGAACGCCTACAGTCACCTCAAAGTCACAGACACCTGGGTTGAGTCTGTGTCATCGGACATGTTGAAGACTCCTCGCTCCCTGCAGCACTTGGCACGCTTCAGACTCAGGAGCTTCCTGGAGGGCCGGGTACACAAGGTGGTTCCTGAACTCGATCTGCCCATCTTCATCAAGAACTACCTGCTCCTGGAGTACAGAGGCTATGTCCACTGAAAGCACTTTGTGTGTAGCCTGTGCCAGTGTGGGTCCTGGTGCTGATTGAATGCTGCTACGTTTGAGGAAGAAGCAGCTGTTTACAATATAATAAGTCAACATCATGATTAAAATAGTGACATCAACCGTAGCACTATACAGTACacttaatatttttaaatacattttgtgcCACACATTTCAGGATGAAGAAGCAGTTGCTTGCTCTGTCACTTTTATTCCAGTTACACGTTTGATAGTGCACCACAAGAGGGAGCTATAGACTAGAGTTGATCAAATACATCACAGGTATGCTattgtatgtttttatatttgttttaaatgtatgtacACTTTTGTATCCTACTTCTGCACTTAATAGTTAGTAGGCTAAGATGCTTGCATTTTTATACATAATAATTATCATGGTAGTTTGATGTTAATGTGCATAGTGATGATGTGTTGTGCATTAAGGATTGCCTTAAAATATTTGTATCAATAAGTATTCCCACCGGTATGTAATTAGgcgttttatataaaaaaataaacgttGTCAAATAAAATATTCCACCATG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157251 lncRNA upstream 108704 21270751 ~ 21326263 (+) True G116657
TU157170 lncRNA upstream 190574 21243641 ~ 21244393 (+) True G116616
TU157136 lncRNA upstream 300955 21129608 ~ 21134012 (+) True G116583
TU157070 lncRNA upstream 404471 21021631 ~ 21030496 (+) True G116538
TU157061 lncRNA upstream 405985 21008040 ~ 21028982 (+) True G116529
TU157330 lncRNA downstream 14397 21454330 ~ 21500394 (+) True G116723
TU157363 lncRNA downstream 174167 21614100 ~ 21662470 (+) True G116746
TU157416 lncRNA downstream 394533 21834466 ~ 21838752 (+) True G116794
TU157417 lncRNA downstream 394533 21834466 ~ 21836347 (+) False G116794
TU157508 lncRNA downstream 495586 21935519 ~ 22020278 (+) True G116857
XM_039816082.1 mRNA upstream 6288 21428019 ~ 21428679 (+) True zgc:92591
XM_039816532.1 mRNA upstream 136634 21291706 ~ 21298333 (+) True cdk5
XM_039816563.1 mRNA upstream 144466 21285152 ~ 21290501 (+) True abcb8
XM_039815362.1 mRNA upstream 226283 21200717 ~ 21208684 (+) True guk1a
XM_039815364.1 mRNA upstream 226283 21201685 ~ 21208684 (+) False guk1a
XM_039814880.1 mRNA downstream 1827 21441760 ~ 21444125 (+) True gbx1
XM_039815842.1 mRNA downstream 141347 21581280 ~ 21595237 (+) True rb1cc1
XM_039815843.1 mRNA downstream 141347 21581280 ~ 21595237 (+) False rb1cc1
XM_039815399.1 mRNA downstream 162119 21602052 ~ 21642496 (+) False st18
XM_039815396.1 mRNA downstream 162120 21602053 ~ 21642496 (+) True st18
TU157037 other upstream 519679 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1059334 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 1918022 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2416241 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 2760905 18672562 ~ 18674062 (+) False LOC120568691
XR_005640709.1 other downstream 431020 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 1168131 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 1201577 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 2237146 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 2410946 23850879 ~ 23855157 (+) True G117319

Expression Profile