RNA id: XM_039816087.1


Basic Information

Item Value
RNA id XM_039816087.1
length 1387
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC120568513
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2154935 ~ 2158565 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAATTCAACCAATGAGATTATTCCTGTCTCCAGAGCAGAAATGTTTGAGGAACTAAAAGCACAATCAGCTTGATTTTGAGAAGAAGGTCTGCACATCAGAGAGGCTGTTTAGTTTCTCATTCTACTGCAGTGGAAGAACATTGCTCatctgctgtctgtttggatTTAACAACTCCAAAGACATGTTGCTTTACctgtttttacttttctctCCCTTTATAGCCCTGGGTTCCATGAACAGCATAAAGCCAGAAAGTACTGAAGAACATGTTGCAGAGGGCAGAAACATCAACCTGACCTGTACATATGAGGGTACTATCTACAGTATCCATTGGTACCGACAATACCAGAGATCCAGACCAGAGTTCCTACTCTACATCACATTCAGTGTCAGTTTTGAAGAACTCACTCCAGTCCAGAAAGAAGAGAACAGTTTAGAAGacagctctgttactctgtcaTACAAATATTTGGAAATGTCATTGGGTGATTATTTCCTCTGGTACcgacaatatccaggaaaaccaccagagttCATCATCTCCCACTCTGCTTCAGGACAAGAAGGAAACAACAATAATGTAATACCTGGATTGAAGATTAAAGTGGAGGACAAACAAATCCATATGACCATCCCCTCAGCTaagctgtctgactctgctgtTTTAGAATCACTTTACCTTAGTAGTGTAACTGAGAGAAGTGAAAATCCAGAGCTACGAGGAGATggagagactcagggaggaactgagctgttactgaactatagaagagagaggaacttctatattcaacagagatcaatacacaaaccatcaacattacctttattcaacatgctgtcactgcagcattgtttGTTTCCTCTGCTGTGTCTTTCCATTCTAACAGGTGTCAGATGTGAAGAACTCACTCCAGTcgagaaagaagagaacagtTTTGAAGACAGTTCATTTACTCTGTCCTATAGATACTCCAAACAAGCTGATAACAAtgattatttcttctggtatcgacaatatccaggaaaaccaccagagttCATCATATTCATCTCAGGGATGAACATTACAAAAAAAGCAGAATCTCTGATATTGGACACAAGGTTCTCTGCGACACTGTCTGAAGAAAAGCATCGTGTGGATCTGCagatctcctctgctgcagtgacagactctgctctgtactactgtgctgtgGATGGAAACAACAGCCCCAAATTCATTCTCAGCCGCGTTCAACGGGATGAAGGGAACACAGCAGACGAGTTCAGGGAGAGATTTTCatctacacacaattccaagTTAAGATCAGTTCCTCtgaagatccagaagcttcagctgtctGATTATGCTGTGTACtctgaggcccacagtgacaggtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149898 lncRNA upstream 166802 1987538 ~ 1988133 (+) True G111305
TU149896 lncRNA upstream 170587 1983941 ~ 1984348 (+) True G111303
TU149890 lncRNA upstream 186310 1968407 ~ 1968625 (+) True G111297
TU149889 lncRNA upstream 191006 1963708 ~ 1963929 (+) True G111296
XR_005640628.1 lncRNA upstream 301776 1846496 ~ 1853159 (+) True LOC120567894
TU149927 lncRNA downstream 70172 2228737 ~ 2229234 (+) True G111332
TU149930 lncRNA downstream 76362 2234927 ~ 2235354 (+) False LOC120568514
TU149953 lncRNA downstream 83328 2241893 ~ 2242215 (+) True G111353
TU149955 lncRNA downstream 87316 2245881 ~ 2246201 (+) True G111355
TU149957 lncRNA downstream 101574 2260139 ~ 2260416 (+) True G111357
XM_039816079.1 mRNA upstream 146055 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 219158 1924151 ~ 1935777 (+) True LOC120567896
XM_039816059.1 mRNA upstream 248137 1898055 ~ 1906798 (+) True LOC120568501
XM_039816058.1 mRNA upstream 264637 1889123 ~ 1890298 (+) True LOC120568500
XM_039816053.1 mRNA upstream 471649 1675742 ~ 1683286 (+) True LOC120568494
XM_039816088.1 mRNA downstream 76256 2234821 ~ 2237560 (+) True LOC120568514
XM_039816090.1 mRNA downstream 305108 2463673 ~ 2464840 (+) True LOC120568517
XM_039816589.1 mRNA downstream 507259 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 574041 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 591289 2749854 ~ 2751572 (+) True LOC120568825
unassigned_transcript_503 other upstream 64196 2090229 ~ 2090739 (+) True LOC120567898
unassigned_transcript_502 other upstream 105437 2044720 ~ 2049498 (+) True LOC120568512
TU149900 other upstream 139063 2008344 ~ 2015872 (+) True LOC120568507
unassigned_transcript_501 other upstream 274650 1879738 ~ 1880285 (+) True LOC120567888
unassigned_transcript_500 other upstream 284261 1870185 ~ 1870674 (+) True LOC120567891
unassigned_transcript_504 other downstream 231 2158796 ~ 2161477 (+) True LOC120567901
unassigned_transcript_505 other downstream 20544 2179109 ~ 2179603 (+) True LOC120567900
unassigned_transcript_506 other downstream 62883 2221448 ~ 2221891 (+) True LOC120567899
TU149958 other downstream 113074 2271639 ~ 2271927 (+) True G111358
unassigned_transcript_507 other downstream 124043 2282608 ~ 2299880 (+) True LOC120568515

Expression Profile