RNA id: XM_039816090.1



Basic Information


Item Value
RNA id XM_039816090.1
length 724
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120568517
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2463673 ~ 2464840 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATGAACAGCATAAAGCAAAAAAGTACTGAAGAACATGTTGCAGAGGACAGAAACATCAACCTGACCTGTACATATGAGGGTACTATCTACAATATCCAGTGGTACCGACAATACCAGAGATCCAGACCAGAGTTCCTGCTCTACATCACAGAGGGAGGGTTGATTCAACCAATTAGCTCTGATTTCTCAGCTCACATTGACAAGTCAAAGAAAAGTGTTAAACTGGAGATCATCTCAGCTAaggtgtctgactctgctgtTCTTTTACCACATGAAATAACAGAGCTGTCTCTTCATTTAGGAGTCAGCTGTGAAGAACTCACTCCaatagagaaagaagagaacagtttaggaggcagctctgttactctgtcctacagatactcCAAACAAGCAGGATATACtgattatttcttctggtatcgacaatatccaggaaaaccaccagagttCATCATCTTTCATTTGGGAtcgcaaaatgaaacaaactctGGACTGTCTGTTTCAGCGAGTGAGGATAAAACCAAAATGGATCTTCagatctcctctgctgcagtgacagactctgctctgtactactgtgctgtgaggcccacagtgacagcaaacccacagtctctgtacaaaaacacaagctGACACACTGACAAGCTGCTGGAAGACTTTTTCTACACTGTTGTACTGAACTTTGTACCTCCACTAGAGGGCGACATTATCAAGTAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149976 lncRNA upstream 28194 2415364 ~ 2435479 (+) True G111370
TU149978 lncRNA upstream 48357 2414102 ~ 2415316 (+) True G111371
TU149970 lncRNA upstream 124254 2338391 ~ 2339419 (+) True G111368
TU149957 lncRNA upstream 203257 2260139 ~ 2260416 (+) True G111357
TU149955 lncRNA upstream 217472 2245881 ~ 2246201 (+) True G111355
XR_005640813.1 lncRNA downstream 9124 2473964 ~ 2474785 (+) True LOC120568944
TU149999 lncRNA downstream 37053 2501893 ~ 2554775 (+) True G111389
TU150002 lncRNA downstream 49314 2514154 ~ 2519456 (+) True G111392
TU150012 lncRNA downstream 90551 2555391 ~ 2556012 (+) True G111401
TU150028 lncRNA downstream 100295 2565135 ~ 2625329 (+) False G111404
XM_039816088.1 mRNA upstream 226113 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 305108 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 454793 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 527896 1924151 ~ 1935777 (+) True LOC120567896
XM_039816059.1 mRNA upstream 556875 1898055 ~ 1906798 (+) True LOC120568501
XM_039816589.1 mRNA downstream 200984 2665824 ~ 2689216 (+) True nmnat2
XM_039816549.1 mRNA downstream 267766 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 285014 2749854 ~ 2751572 (+) True LOC120568825
XM_039816303.1 mRNA downstream 322939 2787779 ~ 2826854 (+) True rasal2
XM_039815924.1 mRNA downstream 834024 3298864 ~ 3304226 (+) True ptmab
unassigned_transcript_508 other upstream 23330 2439709 ~ 2440343 (+) True LOC120568516
TU149991 other upstream 23475 2439736 ~ 2440198 (+) False LOC120568516
unassigned_transcript_507 other upstream 163793 2282608 ~ 2299880 (+) True LOC120568515
TU149958 other upstream 191746 2271639 ~ 2271927 (+) True G111358
unassigned_transcript_506 other upstream 241782 2221448 ~ 2221891 (+) True LOC120567899
TU150017 other downstream 107348 2572188 ~ 2636043 (+) True G111404
TU149996 other downstream 112281 2577121 ~ 2577931 (+) True G111388
TU150031 other downstream 150737 2615577 ~ 2636043 (+) False G111404
TU150110 other downstream 352104 2816944 ~ 2824588 (+) True G111452
TU150157 other downstream 473309 2938149 ~ 2940848 (+) True G111486

Expression Profile