RNA id: XM_039816100.1


Basic Information

Item Value
RNA id XM_039816100.1
length 836
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC120568529
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3803898 ~ 3807690 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTGGTTAATAATTTGGACTGGTTCACCTCAGCAGACACATTCAACAGCAGTAAGGGTTTTTGTATCACTCAGTTTCACTGTGGGAGGATGGATCTTTGGCTCTGGAACTAAACTGTTTGTATCAGATGAGCCGGTAGTGAAGCCCGTGGTGAGCGTGTACCCAGCAGCATCCAGAGCCCACCTGGAGGGGAAGAGCGCCCTGGTATGTCTGGCCTCAGCCATGTTTCCTCCTCTGGTCCAGTTGTCCTGGAAAAGACGAAAGGAGAATGGTCCTCTGGAGGAGCTGCCCTCTGCTGAGAGAGAACAGCTGGAGATCAGAGAGTCGGAACGCAGCGCCGCCATCTTGCTGATCCATCAGCAAGAGAACAGCGAATATAAATACTGCTGCTTCGTCCAGCACGAGTGGTTTACAGTGAAGGCCCAAACAGAACAAGaGGTTTCTACTCttccaccatcaccaccatctCTTCCACCAGCAGCTTCTGTCCCGTCTCAGTACCTCAGTACAGTGGAGGCCCAAACAGAACAAGAGGTTTCTACTATTCCACCATCAGCTTCTGTCCCGTCTCAGTACCAAGTGAAGTTGCTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAACTGAACACATGCTGACTGACTGTTTTCTGCTCACCTTTTCTCACCATCAAATCTCATAAATTCCTCTAATTCATCACTTTGATCAGTATTGACAAATATAAATGATGATGTGTTGTAGTTGTCATCCTAAACATactcatatataaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150647 lncRNA upstream 3200 3799802 ~ 3800698 (+) True G111792
XR_005640701.1 lncRNA upstream 5558 3795799 ~ 3798340 (+) True LOC120568336
TU150645 lncRNA upstream 7666 3795823 ~ 3796232 (+) False LOC120568336
TU150572 lncRNA upstream 143765 3659014 ~ 3660133 (+) False LOC120568521
TU150632 lncRNA upstream 145027 3655819 ~ 3658871 (+) True G111779
TU150565 lncRNA downstream 42417 3850107 ~ 3852034 (+) False LOC120568521
TU150579 lncRNA downstream 42417 3850107 ~ 3850875 (+) False LOC120568521
TU150674 lncRNA downstream 143254 3950944 ~ 3957274 (+) True G111819
TU150676 lncRNA downstream 146338 3954028 ~ 4018396 (+) True G111821
TU150690 lncRNA downstream 194324 4002014 ~ 4005335 (+) False G111832
XM_039815753.1 mRNA upstream 87943 3715566 ~ 3715955 (+) True LOC120568326
XM_039816096.1 mRNA upstream 203326 3596415 ~ 3600572 (+) True LOC120568524
XM_039816094.1 mRNA upstream 251881 3540987 ~ 3552017 (+) True LOC120568521
XM_039815754.1 mRNA upstream 278783 3511629 ~ 3525115 (+) False LOC120568327
XM_039815755.1 mRNA upstream 297770 3491589 ~ 3506128 (+) True LOC120568331
XM_039815756.1 mRNA downstream 8130 3815820 ~ 3825434 (+) True LOC120568332
XM_039816709.1 mRNA downstream 128941 3936631 ~ 3949566 (+) True vcpip1
XM_039816475.1 mRNA downstream 151902 3959592 ~ 3964053 (+) True dusp28
XM_039816474.1 mRNA downstream 151903 3959593 ~ 3964053 (+) False dusp28
XM_039816102.1 mRNA downstream 178755 3986445 ~ 3992589 (+) True LOC120568531
TU150599 other upstream 278849 3500679 ~ 3525049 (+) False LOC120568327
TU150598 other upstream 278849 3511653 ~ 3525049 (+) True LOC120568327
TU150236 other upstream 404715 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 727997 3016958 ~ 3075901 (+) True G111494
TU150715 other downstream 280954 4088644 ~ 4137543 (+) True G111848
TU150718 other downstream 282818 4090508 ~ 4138933 (+) True G111850
TU150765 other downstream 457812 4265502 ~ 4326186 (+) True tmeff1a
TU150809 other downstream 691304 4498994 ~ 4539205 (+) False dnaaf11
TU150808 other downstream 720225 4527915 ~ 4529749 (+) False dnaaf11

Expression Profile