RNA id: XM_039816140.1


Basic Information

Item Value
RNA id XM_039816140.1
length 5340
RNA type mRNA
GC content 0.54
exon number 44
gene id depdc5
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8830077 ~ 8861654 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGAAGTAGCTACAACTAGTGTGAGCTAACGTCAGATTAGTTAGCTAGTAAACTGCTTTCTATTTCCATCTCAAAACGGTGTCTCTAACGTATTTCAACTGTATGTAATGGATGTATTTTCATTACATTAGTTACTGTAACGTTGGGGCTAGTGTTTGTTGACTTAGCTAGTTCAGTAGCTGTAAAAGTGCCTCTGATTAAACGCGCACGCTAGGCTAGCATGTGTCAACATTCCCAGGGCAGTTTGAGCTGCTAGGAGTCTGAGTTGTTGAGGAGGGACTGCTCAGCTGGTTCAGTATGAAGACCAATAAGTCATACAAGCTTGTGCTGCACAAGAAAGGCTTTGGTGGTAGCGATGATGAGTTGGTTGTCAACCCAAAAGTTTTCCCTCAAGTCAGTCTAAGGGATATAATCGAGATCGCACACCCCACAGATGAATACAGTCCTCTCCTGCTGCAAGTGAAGAGCCTGAAAGAGGACCTTCAGAAAGAGACGATCAGTGTGGACCAGACTGTAGCCCAAGCCTTTAAGCTGCGTGCTTACCAGGATGTCATTGTTAACATTGTCGACCCGAAGGATGTTACACTGGACCTGGTGGAGCTGACGTTCAAGGACCAGTACATCGGCAGAGGAGACATGTGGAGACTAAAGAAGAGTCTGGTGAGCACATGTGCTTATGTGACGCAGAAAGTGGAGTTTGCAGGAATCAGAGCCCAGGCCAGTGAACTCTGGGTGAAGGGAGAGAAAGTGACCTGTGGTTACATCAGTGAAGACACCAGGGTGGTCTTCAGATCCACATCTGCAATGGTGTACATCTTTATCCAGATGAGTTGTGAGATGTGGGACTTTGACATCTTTGGGGATCTCTACTTTGAGAAAGCTGTAAATTGTTTCCTGTCTGACCTTTTCGCCAAGTGGAAgGAGAAGAACTGCAGTCATGAGGTGACAGTTGTGCTTTTCTCACGTACATTGTACAGTGCCAAAACTATTGATGAATTTCCTGAGATTCTGAGAGGGTCCATCAGACAGGATCCAGAGGGACGTTTTTATGAAGACTTCTACAGGGTCGTGGCTCAGAACGAGAGACGGGATGAGTGGACATCCTTACTGGTCACGATCAAGAAGCTCTTCATTCAGTATCCCGTCCTGGTGCGGCTGAAAGAAGCAGATGGTTTTCCTGCTGGTTACAACTCCACTGCTGCACAAGGAAACTACCTGGAGGCCATTAACCTTTCATTCAATGTGTTTGACAAGCACTACATAAACCGAAACTTCGACCGCACCGGCCAGATGTCAGTGGTCATCACACCCGGGATGGGAGTGTTTGAAGTCGACCGTCTGCTCATGATTCTCACCAAGCAGCGGATGATCGACAACGGTATTGGTGTAGACTTGGTGTGTATGGGGGAGCAGCCATTGCACGCAGTTCCGTTATTCAAGCTGCACAACAGGACGACACCCGGAGACTCTCGCGTGGGCGACGACTACAACCTTCCTCACTGGATCAACCACAGCTTCTACACCTCCAAAAGTCAGAACTCTTGTAGCTCCTTTACACCTCGAATCAAGCTGGCCGGTCACAAGCTCCATGCTGAGAAATTCAAGAGCAGCAAGGACCACACTCTCTGTGCTCCAAAGGACTCTGAAAACAGCCTGCCCATTCAGGTGGACTACGACGCCTATGATGCTCAGGTGTTCAGACTGCCTGGGCCTTCACGCATTCAGAGGAGCACCACCTTCAGGATGGGTCGAGACAAAGATACGAGTGGGAGAAAGAGCTGGGGCTCGGTGGACATCAGTGCAGGCATAGGCGCGTCCCCGCCTGTTCGCTCTGGAGGTCCGGAGGAACAGCGTAGCCTGGCCTCTGATGACAGTCTGGGCACTGTGTCCAACATGCTGCTTATACCCCGCATGCCTCCAGCACAGTATGAAGTCAGCAGCTCCCTGGGATACACCAGCACCAGAGAGTTGTTGGAGAAGCTGATGGACCCGCTGCGGGACTCCAGTGCCCCGGGCAGGTTCACGGTGGGAAGTGCTGAGTCCACCCTGCACATCCGTCCAGGAGGTTACACCCCTCAGAGAGCACTCATAAACCCCTTCACCCCATCCAGGATGCCCATGAAGCTCACCTCCAACCGGCGCCGCTGGATGCACACCTTCCCCGTTGGTCCTTCTGGAGAGGCGATCCAGATCCATCACCAGACCAGACAGAACATGGCGGAACTGCAGGGCAGCCAGCAGAGAGACCCCGCCCACACCTCCGCTGAGCTGCTGGAGCTGGCCTATCACGAAGCCACTGGAAGGCGAACAGCCTCTAGGCATGCAGGAGAGAACAGCCTTTACATTGTTGGAGGGATGGAAGAGTGTACTGGAAGTCAAGGGAGCAACAACACCAGTGGAACTCTAACCAACCGCAGCTCCACATTTGAAGACGTTTCCCTAAGTGGTGCCGATCCAACCCTGCTGCTGTCTGCACCCCCGACAGTGCCCAGCTTCTGCTGCACAGTGGGGGTGGACTGGAAGTCTCTGACCACACCGGCCTGCCTGCCCCTCACCACCGACTACTTCCCCGACCGCCAGGCGCTACAGAACGACTACACCGAAGGCTGCTACGACCTGCTGCCGCACAGTGACCTGGAGAGgCGCGAAGATGAAGCTCCAGTGATGAGTGCGTCTCAGGTGTTTGAGGAGTTTATCTGTCAGAGGTTGATGCAGGGCTACCAGATCATCGTCCAGCCCAATAACAGGAAACCTCAGCCCGCTGTGGCCACACCGCTTGGCAGCAGTCCTCTTTACTCCAGAGGTTTGGTCTCTCTGCGtcgagcagaggaggaggagacagttTATTGGCTCAGTATGGGCCGGACCTTCCATAAAGTTTGCCTCAAAGACAAGATAATCACTGTCACTCGCTACCTGCCCAAGTACCCGTGCGAGTCAGCACAGATCCAGTACAGCTACAGCCTGTGTCCTCCACATTCTGATGCTCAGTTTGTGTCCTGCTGGGTGGAGTTTGGCCATGAGAGACTGGAGGAATACAAGTGGAACTACCTGGACCAGTACATCTGCTCTGCTGGCTCAGAGGACTTCAGTTTGATAGACTCTCTGAAGTTCTGGAGGACTCGCTTCCTCCTGCTGCCCGCCGGAGGAGCTAGGCGGGTGGCAGACGGGGAGGGGCACTGGGATGTTTATGGGGAGGGAGCAGGTGCGGGGATGGGGGGCAGCGGGGACTGGGTCCTGCTGGATGGCTTCATCCGCTTCCTGGAGGGTCTCAACCGTATCCGGCGTCGCCACCGCTCCGATAGGATCATCAGACAGAAGGGCACACCACTGAAAGGACTGCAGGTTACCAGTCCTCTCCCTCAGTATCCTACCGAGCCTGTGGTGCCCCCACAAGGCAAGAAAGGCACATCAGCTTTATCAGCCTTACTGGAGATGGAGCAAAACCAGAAGACTctggaggagcagcagcagcgagggccttatgTAGACAGTCCCCGCAAGGACGCTGCCTTTATTTTGGATTTTATACGTAGCCCTCGCTCCTCCTACATCTATCACTTTCAGTTGCCTGCTGAAGCCAGCGAGGCTGCTGATAAAGGAGTCCAGCCAGCACTGACggctggagcagcagcagcagcacagccaGCAGGAGAGactgcagccagcagcagcacctcAGACACCAGTGGGCAGTCTGCAGCGGGAGccctttctctgtcctcttcctcAACCCTCTTGGAGATCCTGGAGGCCATCAAACATCCCACGACAGGTGTACAGCTGCTGCCGGAGCAGAAAGGTCTGCCGCTCAACTGCTTTATTAGCGCTGAGGTcgttcattggctggtcaacAATGTGGACGGCGTGGCCACGCAAGGCATGGCTGTGGATATCATGCAGAAAATGCTGGATGAAGGTGTGGTGACCCACGCTTCTGGAGATGCCATGCGCACCTTCGTCTACGGATTCTACTTCTACAGGATAGTAGACGAGAAGGATGGCCCGACCTCCCAGCTTCCCGCCGCAGCGGCTGGAGGCTGGTCTACTGCAGCGCTGGAGGACTTTGCTCTGTTCCAGAGGAAGTGGTTCGAGGTGGCCTTTGTGCTGGAGGAGCGGCGACCCTGCGACCTCCCGGCCTTCCTCCTGCCCTGGCTGCCCAGCCGGCCGGCCTCCTACGCAAGTAGGCACAGCTCCTTCAGCCGCAGCTTTGGAGGACGCAGCCAGGCCGCCGCACTGCTAGCTGCTACAGTCCCGGAGCAGAAGACGGTCACTCTGGATGTGGACGTTAACAACCGCAGTGACCGAACTGAATGGTGCAGCTGTTACTACCACGGAAACTTCTCCCTCAACGCTGCCTTTGAGATCAAGTTGCACTGGATGGCTGTCACTGCTGCAGTGCTCTTTGAGATGGTTCAAATGTGGCACCGGAAAGCCGCGTCCTGCGGCTTCCTGTTGGTCCCCGTGCTGGAGGTTCCTTTTGCCCTGACGTCTTACCTGTACGGAGATCCACTGAGAGCGCAGCTCTTCATCCCTCTGAACATCCACTGTCTGCTGAAGAACAGCAGCGACAACCTGTTCGAAGGTTTTGAACCGGAGACGTACTGGGACAGGATGCAGCTCTTTCAGGAGGCCATACTGTACAGATTTGGCTTCGTGCACGACAAGTTTTCTGCTTCTGCTTTTAATTTCCCGTCTGACAACAAGCCCCAgtacatccacgtaacagGCACCGTGTTCCTGCAGCTGCCGTACTCCAAGAGGAAGTACTCGAGCGGGCAGCAGCGCAGACGCAGGAACTCCACCACCTCCAACAGCCAGGGGCCGTTTGGCGGCGAGGAGCGGGTCGGTTACTACTGGGCCTACAACACCATGCTGACCAAGGCCTGGAGGACGGGCGTGCTGGGCGACGAGAGGCTCGCCGACCGCCTGCTCAGAGACTTCACAGACTTCTGCGCCAACAAGGACAACCGACTGCTCCACCTGTGGGACAGCTGCCAGGAGAAGATGAACGCCAGCGCTCCCTGACAGGAAGCCGCAGGACAACGGAACGTAGATCACGAAAACTTTATTTATCAAAGCAAAAATGTTCAGACTCCGAGTCTGTGCTGCTCCGACTGAGCCCCGATACCAATCAACCACTGGTCCCTTTGGATGTTTACAGCCGGGGCTGGGCGATAATTCAAAGTGATCACTTATCGTCTTTCAATGGGAATCATATCgtgtagagatgcaccgattaccactttctaggccgattccgatttcattttttctaaccactttacagcacacacaaatatttattttctatcttttctttaatagaatattttgca

Function

GO: NA

KEGG:

id description
K20404 DEPDC5; DEP domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152488 lncRNA downstream 2633 8826367 ~ 8827444 (-) True G113106
TU152309 lncRNA downstream 292933 8510833 ~ 8537144 (-) False G112988
TU152310 lncRNA downstream 313321 8510833 ~ 8516756 (-) True G112988
TU152308 lncRNA downstream 319700 8508598 ~ 8510377 (-) True G112987
TU152307 lncRNA downstream 322611 8507228 ~ 8507466 (-) True G112986
TU152506 lncRNA upstream 9046 8870700 ~ 8870923 (-) True G113118
TU152518 lncRNA upstream 81831 8943485 ~ 8943752 (-) True G113129
TU152561 lncRNA upstream 109954 8971608 ~ 8973660 (-) True G113168
TU152589 lncRNA upstream 199241 9060895 ~ 9063239 (-) True G113194
TU152657 lncRNA upstream 252859 9114513 ~ 9168419 (-) False chd7
XM_039816747.1 mRNA downstream 50736 8765172 ~ 8779341 (-) True mrpl37
XM_039816937.1 mRNA downstream 65809 8736657 ~ 8764268 (-) False LOC120569082
XM_039816935.1 mRNA downstream 65992 8736657 ~ 8764085 (-) False LOC120569082
XM_039816934.1 mRNA downstream 65992 8736657 ~ 8764085 (-) False LOC120569082
XM_039816933.1 mRNA downstream 65992 8736657 ~ 8764085 (-) True LOC120569082
XM_039814727.1 mRNA upstream 1417 8863071 ~ 8869794 (-) False rab36
XM_039814725.1 mRNA upstream 1417 8863071 ~ 8869239 (-) False rab36
XM_039814726.1 mRNA upstream 1417 8863071 ~ 8869239 (-) True rab36
XM_039816611.1 mRNA upstream 64156 8925810 ~ 8941447 (-) False LOC120568870
XM_039816610.1 mRNA upstream 64156 8925810 ~ 8941447 (-) True LOC120568870
TU152428 other downstream 40035 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_537 other downstream 342538 8487467 ~ 8487539 (-) True trnak-uuu_16
unassigned_transcript_534 other downstream 2602293 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 2603331 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 2608980 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_538 other upstream 10780 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 11756 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 30277 8891931 ~ 8892004 (-) True trnan-guu_6
unassigned_transcript_549 other upstream 33396 8895050 ~ 8895123 (-) True trnan-guu_8
TU152846 other upstream 540088 9401742 ~ 9403612 (-) False LOC120568397

Expression Profile