RNA id: XM_039816146.1


Basic Information

Item Value
RNA id XM_039816146.1
length 1360
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC120568561
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32347289 ~ 32355822 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATGTCCAAAGGAGTTGACATGCTACATTCCTCTCAGACCCCTTATGTCTTGGGAAggtttgacatgctataatcTCCCCCACCACAAGTGTTTCAGAGCAAACCCAACCCCCACACTGTTCGCATCGTGCAGTCAGGCAGAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGAAGAAGGGAGAGGATGTGCTTCTGAATGTCACCACAGCTGATGTTTCTACAGATGATTCTGTTTTCTGGAGATTCAATAAAACAGTTAATTTAGTACGAtttctacctggtagaggaccAAAAGTCTCTGATGATTACTCTGAAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAATTGAAGAATCTACAAGAGGCAGACAGTGGAGTTTATACTTTAATAGTGTCTGGGGATAAAGATAAACAAATAACTGGATACAAGATCACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGCTCAGACTGGTGTAACCTGGCAGTGAGCTGCAGAGCAAAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCAACACCTGCAgtcaggagggaggagagagacaacTGGTCCCACCATCTGGTGCTGCTCTCCATGTCTACCTGTCCAATTTTTCCATCATCTGTAACCATAGCAACCAGGTCAGCTGGACAAAGGACATGAAACCAATTAAAAACGTCTGCCCTCGACATACTGGTCCAGAGAGTGTCTCTgctggtgtctctgtgtgcctgcTGAAGACAGCCGTGTTGTCTGTCGGTCTGATCATCACATGGGTGCAAACAATGTAAGatttaaaaagtatttgtaTAAAATCTGgggaaaatgtatttcaacTCGTTTGTAAATcttaaattatactttaaatgCAATTTTGCAGGTATAACTTCATATAAATATTGTTTCTTtccaagaaaactccacagggcaccttttaCACAAATGCTGATGATTCTAAATTATCCATTGATTATACCCAATAACCACTGTGCTCAGTTTGTAAATCAAATTATTTTACAGAGATGTTCCAAAATACTTTACAAGCATGTAATCTCCTTTACAAAAAactatatttatatgtatatgatAAAGAGCAAAGACACAATAACTAGCCTTGATGTAATCCTGAATGTTATTAACAATGTTCTAaccatatatatgtgtatgtttatgtgtacaGGATGTTATTATATTTGTTCATCTTTGGGTAAATGCAGTATCTGAGATTCATTAAAACTATACTCATCTTAta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160878 lncRNA upstream 5944 32341125 ~ 32341363 (+) True G119409
TU160858 lncRNA upstream 222392 32124564 ~ 32124915 (+) True G119398
XR_005640633.1 lncRNA upstream 287934 32056055 ~ 32059373 (+) True LOC120567918
TU160760 lncRNA upstream 431706 31849440 ~ 31915601 (+) True G119332
TU160887 lncRNA downstream 8744 32364566 ~ 32364768 (+) True G119416
TU160888 lncRNA downstream 16741 32372563 ~ 32403711 (+) True G119417
XR_005640736.1 lncRNA downstream 148390 32504212 ~ 32505293 (+) True LOC120568573
TU160929 lncRNA downstream 193322 32549144 ~ 32555738 (+) True G119453
TU161009 lncRNA downstream 208019 32563841 ~ 32564486 (+) True G119519
XM_039816142.1 mRNA upstream 21660 32232208 ~ 32325647 (+) True kirrel1b
XM_039816143.1 mRNA upstream 21660 32232208 ~ 32325647 (+) False kirrel1b
XM_039815393.1 mRNA upstream 124494 32128462 ~ 32222813 (+) False cadm3
XM_039816170.1 mRNA downstream 81636 32437458 ~ 32441095 (+) True LOC120568571
XM_039816171.1 mRNA downstream 81636 32437458 ~ 32441095 (+) False LOC120568571
XM_039816169.1 mRNA downstream 81638 32437460 ~ 32441094 (+) False LOC120568571
XM_039816165.1 mRNA downstream 96883 32452705 ~ 32471570 (+) False LOC120568569
XM_039816161.1 mRNA downstream 96883 32452705 ~ 32455106 (+) True LOC120568569
TU160865 other upstream 120824 32188980 ~ 32226483 (+) True cadm3
TU160866 other upstream 120824 32189072 ~ 32226483 (+) False cadm3
unassigned_transcript_563 other upstream 220877 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160818 other upstream 276007 32067612 ~ 32071300 (+) False LOC120567694
TU160769 other upstream 434700 31888928 ~ 31912607 (+) False pip4p1a
XR_005640735.1 other downstream 96883 32452705 ~ 32455106 (+) False LOC120568569
XR_005640734.1 other downstream 96883 32452705 ~ 32455106 (+) False LOC120568569
TU161081 other downstream 412885 32768707 ~ 32769852 (+) True G119582
TU161083 other downstream 419252 32775074 ~ 32775682 (+) True G119584
TU161084 other downstream 425166 32780988 ~ 32781471 (+) True G119585

Expression Profile