RNA id: XM_039816152.1


Basic Information

Item Value
RNA id XM_039816152.1
length 3591
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC120568564
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32538197 ~ 32555689 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGTCTCCTCTGGTAGAATTTGCGAGCAGTGAGACCGGGCTTTGGATCAGAAACAGGAGCTCCATGAGCCAATGACTGTCTCCATAACTCTACCCAATGGTTTATCAGTGTTGTGGGACGCAGACTGCTGAAGTTACTCTTCCTGCAGAGTTACAGTGCCAGTTGTCCCAGTGATGTGAGCCGGCGTATGACAACAAAGCAGACATGTGGACGGAAGGCTGAGGCTCGGGGCTCCCCCACTCCTCTCTGCGCCGCAAAGTTAGATTGCAGTCCCAGCTGTAAAGCTCCTCCCCTCAGAAGGTGTGCCACTCCCAAACACAGACCGATGTTTTAAAGCCCTTACTGGGTGGTGGCTTATCCGCTGGGGGTGGGActctgaggaagaggaggcgcGTCCTGTCCAAAGATGGGCGTAGCAACGTGCGCATCGAGCACGTCAGCGGCCGGAATGCTCTGTACATGCGGGACCTCTGGACAACATTTCTGGACATGCAGTGGCGCTACAAGTTGTTCCTGTTCACGGCCACGTTTGCGGGGACCTGGTTCTTGTTCGGGGTGCTGTGGTATCTGATGGCACTGGTGCACGGAGACCTGCTTGAGTTCGACCCCCCGTCGAACCACACCCCCTGTGTGATGCAGATGCAGACCCTGACGGGGGCTTTCCTCTTCTCCCTGGAGACCCAGACCACCATTGGTTATGGTTTCCGTTGCATCACTGAGGAGTGTCCCGCAGCCATCATCCTCCTCATAGTCCAGCTCGTCATCACCATGCTGATGGAGATTTTCATCACTGGTACTTTCCTGGCCAAGGTTGCTCGGCCAAAGAAGCGAGGTGAGACGGTGAAGTTTAGCCAACATGCTGTGGTGTCGACCCACGAAGGCCGACCCTGCCTGATGATCAGGGTGGCCAACATGCGCAAGAGTCTCCTGCTCGGCTGTCAGGTGAGTGGAAAACTGCTCCAGACATCTCTGACCAAGGAAGGGGAGACGGTTCGTCTGGACCAGAGGAATGTTCCCTTCCAAGTGGACACGTCTAGCGACAGCCCCTTCCTCATCCTGCCCCTCACCTTCTACCACCTCATCGACGACAACAGCCCCCTGCGAGCCTGGGCAGACAAGGGTGGAGGCTGGACAGATCCAGAGTTGGCAGACTTCGAGCTGCTGGTCATCATGAGCGCTACAGTTGAGCCGACCTCGGCCACCTGCCAGGTTCGCACCTCCTACCTGCCCGATGAGATTCTCTGGGGTTATgagtttccacctgtagtctCCCTTTCCCCATCGGGCAAATACGTAGCGGACTTTGCCTTCTTCGACAAAGTGGCCAAGACCAAGACCACGCCCATCTTCAAACCATCCAGCCCCCAGCATGGGTACCAGAGCAACGGGGGTGCTGTGTCTGAGGGGTCCGATCCAGAGAAGATCCGTCTGGAGCAGAGttacagggagagaggggaggaacgTGGCCGCGTCAGAGACACTCCTCTCAGTGTTCGCATCAGCAATGTGTGAACAGATGAAATGGTTGAGAAGGGAGCGTGTCCTAGAGAGCAACACGCAGGAGACAGCCAAGAACAATGTCAATAGCAAATGAATCAAACATCATCAAAACAACTCTGGAGACTGTCTTCTTAGACTGTTTTAACTTTTGAAAGATATATATGCCCCAGTAGCACCTGATGATGCAGAAAGCAAATATGGAAGACTGGACTACTGTATGGTCAACTTCAAGTTTGTCATTGTTATACACTTGCTGGGAAGACTCATGTTTTACACTGGTTTGACTCTATTCATGTGACGGCATAACTGCAGCTATGTTTTACATTTGAGTGATGCAAGTGCACATGCACCTCacatattagggctgggcatctGTACTCAATCCCTAATATCCCAGTACCAAGTAATGTTGAAACTTCTCTCTGGTCAAACAATGCCGACATTTGATCCTTTTTGTACCCAGATCTAGAAGAAAATAGTATTTGTATGGTTTTTCTCATAGCCAACCACCACAAACATTCTTCGATTTATATGTGATTGgtttgctgcagcagcagctatgGTGGGTTTGTGTGGCACACAACTGATGTTTCCATTCACATGATGTAGAAAAAAGGTATCAAGGGAAGTCTATTGGTATCTGTATCACTTTAAGGGAAGTGGTATTGTAATTATTTGTattgatacccagccctatcaaatatactgtatacccTTTTCTAACTAAAATAACACATCAGGTTATTTATTTGCaaagaaataaacataaaagatacaaaacTGAAGTAAACAAGCAGAGGAGACAATGGAAACCCCAGTTGTCTATTTTGGGTCCTCCCCAGCTTACTAAATGTTGAATCACAAAGAGAAAAACTTGTCGGAGTCAATATAAGTGGGGTTTTCCAATTTCAAGGTTTAACAGGGGGCCGTAAGGTAGTATGATAACGGGACAGGAAACACTCACATACTTCCTCTAAAAATTTGGTTAATACACACAGTGTATGTTCTAGACATTTAGAAGTAAAATTATATTGGCAACTCGGGTTGCTTTTATTACTATAAAAAAACACCAATGAGTAATGCTATGCCAGTTCATCGAGGACTTAAAAAACTCCTACACCACTCTGTTGCTACACCCTGATACtgatatttttacatttcctgttttaaaaTGATGGAAGTTCTTGacttaaacacacaaacagcacgacatgtatgtgtattgtacATGGCAATGCAGGGTAATATGTTATCTAAAGCACTTTCTGTTAAACTAATGTAGCACTACAACTGGAAAGTAGACAAACTTCAGATGAATATTCTGTATTCATGGTGCTCTGTGCTGAATCTCTTGATGGTGTGAGCATTTCCTGTACGACTGTTACTGCTGTTTCACAACAGAAAGTCAGCACTTTATGGAAGTACATGATGTACAATTAGCACCTTAGGAAGATTATCTTAGGATAGAAGATATATTTTAATAACACTAAAGGCACTTacacaatgaaataaaatgaaaacagaatAGACTTTAAAACTGATGCTTCCTTCCTACAAAACTTTCTTTAAGCAAACTGACTGATACAAATGAGAGCATGTCTTCTGATCATACATACTTATAAATGCCCATCAGGTTATCGTGGTTTGCAAATATCACTCTGTAAACATCAAAGAAGCTCTCCTTTCTGTGTAAAGTAGGAGCCTTCTGCATGTCCATGTGTTTTTAGAGTTACTAACATTGTCGAATTAACAACGAACATTTTGTCCAAGCCCCTTTTATTTCCAGTCTAGACGACAGGAACATGGGGAGGACCACCAGAGGGGAGGGCTGAGAATGGGAAAGTGATGTAGTAAGTCACTGATAATGATTCTATATGTGATGGTGAAGTGTGACAATGATGAAGCAAGGATGAGTATGATGGATATGAATATGTTGGAAATTGAACTTTTTTTCATCTGGTATTTGTAACATTTTCTGAATTAACATTAAGCTCTGGAATGTTAATAGTGTTTAAAGTGCAGATGGAGAGATCAAATTAGACAACTCTctctaaaaaatgttttaataaagatGATTATGAGTTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160974 lncRNA downstream 84149 32438827 ~ 32454048 (-) True G119492
TU160959 lncRNA downstream 118308 32403526 ~ 32419889 (-) True G119479
TU160962 lncRNA downstream 119202 32417963 ~ 32418995 (-) True G119482
TU160958 lncRNA downstream 173103 32364859 ~ 32365094 (-) False LOC120568568
TU160957 lncRNA downstream 173416 32364461 ~ 32364781 (-) False LOC120568568
TU161013 lncRNA upstream 10283 32565972 ~ 32566391 (-) True G119523
TU161018 lncRNA upstream 14308 32569997 ~ 32570682 (-) True G119528
TU161066 lncRNA upstream 37685 32593374 ~ 32594044 (-) True G119567
TU161069 lncRNA upstream 94000 32649689 ~ 32649976 (-) True G119570
TU161099 lncRNA upstream 201521 32757210 ~ 32757652 (-) True G119590
XM_039816158.1 mRNA downstream 106 32524542 ~ 32538091 (-) True LOC120568566
XM_039816159.1 mRNA downstream 106 32524855 ~ 32538091 (-) False LOC120568566
XM_039816156.1 mRNA downstream 24215 32491668 ~ 32513982 (-) False LOC120568565
XM_039816157.1 mRNA downstream 24218 32488817 ~ 32513979 (-) False LOC120568565
XM_039816000.1 mRNA upstream 38969 32594658 ~ 32600456 (-) True LOC120568447
XM_039815974.1 mRNA upstream 47454 32603143 ~ 32614898 (-) True LOC120568440
XM_039816003.1 mRNA upstream 62357 32618046 ~ 32623091 (-) True LOC120568450
XM_039816022.1 mRNA upstream 73753 32629442 ~ 32647388 (-) True si:dkeyp-68b7.12
XM_039815994.1 mRNA upstream 103846 32659535 ~ 32713327 (-) True tesk2
TU160944 other downstream 311837 32216502 ~ 32226360 (-) False G119465
TU160945 other downstream 311837 32218507 ~ 32226360 (-) True G119465
TU160835 other downstream 486758 32047477 ~ 32051439 (-) True G119379
TU160692 other downstream 963007 31490252 ~ 31575190 (-) False zeb1a
TU160576 other downstream 1366587 31170382 ~ 31171610 (-) False G119169
TU161095 other upstream 206656 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 206656 32762345 ~ 32765076 (-) False fcer1gl
TU161088 other upstream 206758 32762447 ~ 32765151 (-) False fcer1gl
TU161089 other upstream 206758 32762447 ~ 32765151 (-) False fcer1gl
TU161092 other upstream 206758 32762447 ~ 32765151 (-) False fcer1gl

Expression Profile