RNA id: XM_039816153.1


Basic Information

Item Value
RNA id XM_039816153.1
length 2436
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC120568565
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32488817 ~ 32513982 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtcttttgttgtttggaATTGATATCTTGTGTtaagtttcttttattttgctctttttatttgtttattttcaatATTGTTTTGACTCTAGGTTGGGGAGTGAACCCcttttaattgtgtgtgtgtgtgtgtgttttccatttCTTTCCCCATTTTTTAGTTGCTGAGAGCTGAAGGTGTTGGTGTCCGGGTGGTGGTATCCCTTTTCCTGTGTGCTGTGCGTTTCCCCGTATTCATTTGCTGTGTTCACTATTTTTGTTTGCGTGTTCACGGGTGACCTTCCTTGGGATCCTTTACCGTCTTCGTTCCCTTCTCCCCCTCCACTGGTGTGACCTACAGCCTTACCTCAGAGTCCAACAGTTGAAGATATAGGTCTTTCTCCAACCTCCACCTACTGCTTGGTAGGACCTCACACTGGACCTGTGGATTCCAGTAAGACAAGAGCCCCTTTTATTTCCAGTCTAGACGACAGGAACATGAAGAGGACCACCAGAGGGGAGTGCTGAGAATGTGAAAGTGATGTAaaacaaTTCCAGTTGAAACTCTGTTCCACTCAGTGGATTGCCCAGAAACATTTCTGAGAAGATACACGCTGAGCTCAGTTCATATACAGCCTTACCACTTCCTCATATGGTACATGTTACAGGCAAAATGGAGCTTGTCGTACTTCTCTGTGCCGTTTctctgctgcattcatgtgaagCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGAAGAAGGGAGAGGATGTGCTTCTGAATGTCACAATAGCTGATGTTTCTACAAATGATATTGTTTTCTGGAGATTCAATAAAACAGTTAATATAGTAAGATTTTTAGCTGGAAAAGAAACAATCTTTGATGATTCTGGAAGGATTGAGGTGCTTGAGAACTACTGTGTGAAATTGAAGAATCTACAAGAGGCAGACAGTGGAGTTTATACTGCAGTAGTGTCTGGGggtaaagaaaaaacaataacTGGATACAAGATCACAGTCCAAGATCCAGTGTCTGCAATTAATCTGACAGTGGACTCTGTGTCTAACAGCTCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCACAGGACTCTCACATTAGCAGCACCTTTAGATGTGACACCCACACCTGCAGTCAGGATGAAGGAGAGAGATCCCAGGTCACACCCTCTGCTGCTGATCTCCATGTCTACCTGTCCAATGGCTCCATCATCTGTAACCACAGCAACCAGGTCAGCTGGATCAAGGAcatgaaaacaattaaaaatttCTGCCCCCAACTTGCTGttcAGGAACACTCCACCAATGCCATCTCTGTAGCTGGTGCTATTGGCATAGGTATCTTTctcttgtgttgtgttgcagcagcagcattttgttaTCTTCAAAAGAGAGGACATAAAAGAGAGAGCATGGAGAATACAGTATATGAAGTTCCTCGGGTCGGACATACAACCTTACCTCAGAGTCCAACAGCTGAAGGTATAGGTCTTTCGCCAACCTCCACCTACTGCTTGGTAGGGCCTCACACTGGACCTGTGGATTCCATTACGACAAGAGGCACGACTCTGCCAGAGAGTCTTTATGCTCAGGTGGATAAACCTGCTAGGTCCTTAAACAAGTAATCAGCATGGTATTCTACATACTGCTACACGTTCAAAATATGCGActccagaaccattgtaccTCAAAATTTGAGGTACAATGGTATTTTTGAGGCTCAAaatacttacagaaggaccccaaagcaCTTAGCAACCACACTGTAGGCcctatagcctactactgacttactgtgtattCCTCCTTCAGAGAAAAAACATTGTACTGccacatttacctgacagacgtggcagattcagaatttaatcacaaaatatcacaattaaaaagtGGAGTAATCACAGGCATGCGCCACCCAATCcgtttttattgagtttcctcttagtgAAATGCTGAGTGAATTTGGTAGTGAAGGGTAGACACGAAAGAGCCAGCGTTATGGCAGCGCTCTTTTTCAGCGGCCTTTtagttttattcacagtttaatATCCAACGCTGTCCAATCGGCTCCAAATTCCAATCCTGAAGTTTGTTGACagaccacacacatacagaggctTCCCTGTTTATCAGATAgatgaacatgtgtgtgtgtgtgtatgtgtgtgtatgtgtatgtatgtatgtatgtatgtatgtatgtatgtgtgtctcaggGAGGTCCTGGAAGATATATTTGTGTGAACCTGTGAGAGTACCATAATGAATAATATATTATGTCTACCTTGAACCAAACCTTTGTTCCTCTGGTGCCCCTTTCTCTCTCAACTCTTACCTCATCATGTAAATAAATGCGAATCGAGCAATTTTTAGAAAATGTAGATATTCTTGTGTGTCTAATTAAACCTTTGGCACAGTGTAACTTGAA

Function

GO: NA

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160974 lncRNA downstream 34769 32438827 ~ 32454048 (-) True G119492
TU160959 lncRNA downstream 68928 32403526 ~ 32419889 (-) True G119479
TU160962 lncRNA downstream 69822 32417963 ~ 32418995 (-) True G119482
TU160958 lncRNA downstream 123723 32364859 ~ 32365094 (-) False LOC120568568
TU160957 lncRNA downstream 124036 32364461 ~ 32364781 (-) False LOC120568568
TU161013 lncRNA upstream 51994 32565972 ~ 32566391 (-) True G119523
TU161018 lncRNA upstream 56019 32569997 ~ 32570682 (-) True G119528
TU161066 lncRNA upstream 79396 32593374 ~ 32594044 (-) True G119567
TU161069 lncRNA upstream 135711 32649689 ~ 32649976 (-) True G119570
TU161099 lncRNA upstream 243232 32757210 ~ 32757652 (-) True G119590
XM_039816160.1 mRNA downstream 114299 32364719 ~ 32374518 (-) True LOC120568568
XM_039816637.1 mRNA downstream 622120 31865738 ~ 31866697 (-) True LOC120568891
XM_039816634.1 mRNA downstream 628739 31838382 ~ 31860078 (-) True kcnj9
XM_039816983.1 mRNA downstream 667393 31802504 ~ 31821424 (-) False LOC120569109
XM_039816158.1 mRNA upstream 10564 32524542 ~ 32538091 (-) True LOC120568566
XM_039816159.1 mRNA upstream 10877 32524855 ~ 32538091 (-) False LOC120568566
XM_039816152.1 mRNA upstream 24219 32538197 ~ 32555689 (-) False LOC120568564
XM_039816148.1 mRNA upstream 24219 32538197 ~ 32555689 (-) True LOC120568564
XM_039816151.1 mRNA upstream 24219 32538197 ~ 32553364 (-) False LOC120568564
TU160944 other downstream 262457 32216502 ~ 32226360 (-) False G119465
TU160945 other downstream 262457 32218507 ~ 32226360 (-) True G119465
TU160835 other downstream 437378 32047477 ~ 32051439 (-) True G119379
TU160692 other downstream 913627 31490252 ~ 31575190 (-) False zeb1a
TU160576 other downstream 1317207 31170382 ~ 31171610 (-) False G119169
TU161095 other upstream 248367 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 248367 32762345 ~ 32765076 (-) False fcer1gl
TU161088 other upstream 248469 32762447 ~ 32765151 (-) False fcer1gl
TU161089 other upstream 248469 32762447 ~ 32765151 (-) False fcer1gl
TU161092 other upstream 248469 32762447 ~ 32765151 (-) False fcer1gl

Expression Profile