RNA id: XM_039816158.1


Basic Information

Item Value
RNA id XM_039816158.1
length 1507
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC120568566
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32524542 ~ 32538091 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTCACCATGCTCTATATATACTGGTTTCATTTGAGTTGctcaaataataaagtaataagTTTAGAGACATTTCTTTTGTAGAAACAGTTCCAGTTGAAACTCTTCTCAGTGGATTGCCCAGAAAAATGTCTGAGAAGGTGCAAGCTGAGCTCAGTTCATAAATAGCCTTACCACTTCCTCATATGGTACATTTAGCAAAATGGAGCTTGTTGTACTTCTCTGTGCCGTTTctctgctgcattcatgtgaagCACAAGAGTCCAGTGCTGTGACTCCTGTGTTtgtgaagaagagagaggatGTGCTTCTGAATGTCACAATAGCTGATGATCCTAAAGACGATACTGTTATCTGGAGATTCAATAAAACAGTTAATTTAGTACGATTTTTACCTGGTAGAGGACCAAAAGTCTCTGATGATTACTCTGGAAGAATTGAGTTGCTTGAGAACTACTCTGTGAAATTGAAGAATctaacagagacagacagtggAGTTTATATTGCAGTAGTGTCTGGggataaagaaaaacaaataactgGATACAAGATTACAGTCCAAGatcCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGCTCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCACAGGACTCTCACATTAACTCCACCTTTAGATGTGACACCCACACCAACACCTGCAGtcaggaggaaggagagagatcACAGGTCCCACCCTCTGCTGCTGATCTCAATGTCTACCTGTCCAAAGGCTCCATCATCTGTAACCATAGCAACCAGGTCAGCTGCACCAAGGACATCGAAGTAATTGAAAAATTCTGCCCCCGACATGCTGgtCGTGAACCTTCAAATGCCATCTCTGTGGGTGCTGGTATTGGCATAGgtatctctctcttcctcctatgtattgtagcagcagcagcagcagcagcatttcgTTATCATCAAAAGAGAGGACAATATAAAAGAGAGAGCATGGAGAATACAGTATATGAAGTTCCTCGGGTCGGACATACAACCTTACCTCAGAGTCCAACAGCTGAAGTTACAGGTCTTTCTCCGACCTCCACCTACAGCACGGTAGGGCCTCACACTGGACCTGTGGATTCCAGTACGACTCTGCCAGAGAGTCTGTATGCTCAGGTGGATAAACCCAGGTCCTTAAACAAGTAATCAGCATGGTATTACACATATACAATTTACAGTTTAGCTGTCTATGTTTACAGTAATGTAAGTTCATGTGACCTGCTCTGGTATTGAGAGACTCCTCCAATACAGAAACATTTCAATGGAAACAgctgtaatataatgtaatgttattagtatttttgtagtattatgttaatatgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttaaacacCTGGACATTTAAATATCTGGGGTCAATATCTGCGCATTTCgtaattttttttcattgagCCATGTGTcattaaaaattatattttgttttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160974 lncRNA downstream 70494 32438827 ~ 32454048 (-) True G119492
TU160959 lncRNA downstream 104653 32403526 ~ 32419889 (-) True G119479
TU160962 lncRNA downstream 105547 32417963 ~ 32418995 (-) True G119482
TU160958 lncRNA downstream 159448 32364859 ~ 32365094 (-) False LOC120568568
TU160957 lncRNA downstream 159761 32364461 ~ 32364781 (-) False LOC120568568
TU161013 lncRNA upstream 27881 32565972 ~ 32566391 (-) True G119523
TU161018 lncRNA upstream 31906 32569997 ~ 32570682 (-) True G119528
TU161066 lncRNA upstream 55283 32593374 ~ 32594044 (-) True G119567
TU161069 lncRNA upstream 111598 32649689 ~ 32649976 (-) True G119570
TU161099 lncRNA upstream 219119 32757210 ~ 32757652 (-) True G119590
XM_039816156.1 mRNA downstream 10560 32491668 ~ 32513982 (-) False LOC120568565
XM_039816157.1 mRNA downstream 10563 32488817 ~ 32513979 (-) False LOC120568565
XM_039816155.1 mRNA downstream 10564 32488817 ~ 32513978 (-) False LOC120568565
XM_039816153.1 mRNA downstream 10564 32488817 ~ 32513978 (-) True LOC120568565
XM_039816154.1 mRNA downstream 24441 32488817 ~ 32500101 (-) False LOC120568565
XM_039816152.1 mRNA upstream 106 32538197 ~ 32555689 (-) False LOC120568564
XM_039816148.1 mRNA upstream 106 32538197 ~ 32555689 (-) True LOC120568564
XM_039816151.1 mRNA upstream 106 32538197 ~ 32553364 (-) False LOC120568564
XM_039816150.1 mRNA upstream 106 32538197 ~ 32553326 (-) False LOC120568564
XM_039816000.1 mRNA upstream 56567 32594658 ~ 32600456 (-) True LOC120568447
TU160944 other downstream 298182 32216502 ~ 32226360 (-) False G119465
TU160945 other downstream 298182 32218507 ~ 32226360 (-) True G119465
TU160835 other downstream 473103 32047477 ~ 32051439 (-) True G119379
TU160692 other downstream 949352 31490252 ~ 31575190 (-) False zeb1a
TU160576 other downstream 1352932 31170382 ~ 31171610 (-) False G119169
TU161095 other upstream 224254 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 224254 32762345 ~ 32765076 (-) False fcer1gl
TU161088 other upstream 224356 32762447 ~ 32765151 (-) False fcer1gl
TU161089 other upstream 224356 32762447 ~ 32765151 (-) False fcer1gl
TU161092 other upstream 224356 32762447 ~ 32765151 (-) False fcer1gl

Expression Profile