RNA id: XM_039816164.1


Basic Information

Item Value
RNA id XM_039816164.1
length 1052
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC120568569
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32452705 ~ 32471570 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCGTTGTGTCGTGCAGTCAGGCAGGACAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGCAGAAGAGAGAGGATGTGCTTCTGAATGTCACAATAGCTGATGATCCTAAAGAAGATATTGTTACCTGGAGATTCAATAAAACAGTTAATTTAGTACGATTTCTACCTGGGAACCTCGGAGCAAAAGTCTCTGATGATTACTCTGGAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAACTGAAGAATCTAACAGAGGCAGACAGTGGAGTTTATACTGCAGTAGTGTCTGGGGATACAGATAAACAAATAACTGGATACAAGATTACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGACCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCACAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCTGCAgtcaggagggaggagagagaccaCAGGTCACACCCTCTGCTGCTGATCTCCATGTCTACCTGTCCAATGGCTCCATCATCTGTAACCATAGCAACCAGGTCAGCTGGACCAAGGACATGAAAATAATTAAACATTTCTGCCCCCGACATGCTGAGAGTGACCCTGCtggtctctctgtgtgcctgctGAAGACAGCCGTGTTGTCCGTCGGTCTGATCATCATGGTGGCTGCTGTCATCACTGTTCACCTCATGGAGAAGCTCAAGAAGCGCAAATAAAAACTTGAAGCAGGTGGCAGTCACACACCAGGAAATGAACCAACAAAGGAGAGGAGGTAGAAGTCTGCAAGCCAGAAAACATAGATTTTAATATGTGTACAAAATCTGGGAAAATATGAATCCTAACACATTTGTAAAGCTTCAACGGTTTTAACAATGCAATTTGGAGAATATAACATCATGTAAATATTGTTTCTTTCCAAGAAAACTTCTCACCTTTAATAAAAATGCTGATTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160888 lncRNA upstream 48994 32372563 ~ 32403711 (+) True G119417
TU160887 lncRNA upstream 87937 32364566 ~ 32364768 (+) True G119416
TU160886 lncRNA upstream 102992 32348121 ~ 32349713 (+) True G119415
TU160878 lncRNA upstream 111342 32341125 ~ 32341363 (+) True G119409
TU160858 lncRNA upstream 327790 32124564 ~ 32124915 (+) True G119398
XR_005640736.1 lncRNA downstream 49106 32504212 ~ 32505293 (+) True LOC120568573
TU160929 lncRNA downstream 94038 32549144 ~ 32555738 (+) True G119453
TU161009 lncRNA downstream 108735 32563841 ~ 32564486 (+) True G119519
TU161034 lncRNA downstream 178522 32633628 ~ 32634719 (+) True G119541
TU161051 lncRNA downstream 254189 32709295 ~ 32710372 (+) True G119556
XM_039816170.1 mRNA upstream 11610 32437458 ~ 32441095 (+) True LOC120568571
XM_039816171.1 mRNA upstream 11610 32437458 ~ 32441095 (+) False LOC120568571
XM_039816169.1 mRNA upstream 11611 32437460 ~ 32441094 (+) False LOC120568571
XM_039816147.1 mRNA upstream 96883 32347304 ~ 32355822 (+) False LOC120568561
XM_039816167.1 mRNA downstream 17514 32472620 ~ 32486408 (+) True LOC120568570
XM_039816168.1 mRNA downstream 17515 32472621 ~ 32486408 (+) False LOC120568570
XM_039816543.1 mRNA downstream 120207 32575313 ~ 32586349 (+) True LOC120568820
XM_039816001.1 mRNA downstream 196198 32651304 ~ 32656857 (+) True si:ch211-155e24.3
XM_039816005.1 mRNA downstream 261647 32716753 ~ 32721611 (+) True LOC120568452
TU160865 other upstream 226222 32188980 ~ 32226483 (+) True cadm3
TU160866 other upstream 226222 32189072 ~ 32226483 (+) False cadm3
unassigned_transcript_563 other upstream 326275 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160818 other upstream 381405 32067612 ~ 32071300 (+) False LOC120567694
TU160769 other upstream 540098 31888928 ~ 31912607 (+) False pip4p1a
TU161081 other downstream 313601 32768707 ~ 32769852 (+) True G119582
TU161083 other downstream 319968 32775074 ~ 32775682 (+) True G119584
TU161084 other downstream 325882 32780988 ~ 32781471 (+) True G119585
XR_005640727.1 other downstream 534684 32989790 ~ 33047134 (+) False tep1
TU161294 other downstream 708810 33163916 ~ 33166100 (+) True LOC120568463

Expression Profile