RNA id: XM_039816173.1


Basic Information

Item Value
RNA id XM_039816173.1
length 1322
RNA type mRNA
GC content 0.51
exon number 4
gene id psmb5
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12546361 ~ 12553571 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAGCAAACAATTGGTGGTGACACAGGGGGCGCTGTGTCATTTTGCAACCATGACTCAATAAACTTTCGCACTCTTACCCAGCGGAAGTTCCTTGCTCATCAGACAATTTCAAAGATGGCTCTTGCTAGTGTGTTGAACAGTGATTGTGCGaatttttcatttgaaaattGTCAACCTTTTGGTTTTGGTTGTGGACCCGGACAGAGCGGTCTGGGATTTGACGCTACGCCGGGAGACGGTCTCAGTTTTTCCGTTAAAAACCCGCTGTGTGCCGGAGACGAGGATGGCGTCGAAAGGAAAATAGAGTTCCTGCATGGAACCACCACCTTAGCATTTAAATTCCAGCATGGTGTTATTGTAGCGGTGGACTCTCGGGCCACAGCGGGCTCCTACATCGCCTCGCAGACAGTGAAGAAGGTGATTGAGATCAACCCCTACCTGCTGGGTACCATggctggaggagctgcagaCTGTAGCTTTTGGGAGCGCCTGCTGGCCCGCCAGTGCCGCATCTACGAGCTTCGCAACAAGGAACGCATCTCTGTGGCGGCAGCCTCCAAGCTGCTTGCTAACATGGTGTACCAGTACAAGGGCATGGGACTCAGCATGGGGACGATGGTGTGTGGCTGGGACAAGAGAGGCCCAGGGCTGTACTATGTCGACTCCGAGGGGAACCGGGTGTGTGGCGACCTGTTTGCCGTGGGCTCAGGCTCCATGTACGCCTACGGTGTGATGGACAGTGGCCTGCGGCAGGACCTGACTGTGGAGGAGGCCTGCGAGCTGGGTCGGCGCGCCATCTACCAGGCCACATACCGTGACGCCTACAGCGGAGGGCAGGTCAACCTGTACCACGTCCACAGCGAGGGATGGACCAGGGTCTCCCAGGAGGATGTGCTGATGCTGCACCAGCAGTACAAGGATCAGGCATAGTCATGAAAGTCAAGATCACAGAGGGGGCTAGGAAGTGGGGAGAGAATAGGGATGTTTAGGAGTTTATTCTGCTATCTAATGTTTAAGATGTTCTGACACGTGAATAAAAAGGACTGATCTGCCAATTGATTTTCACTCACATTACTTCTGTGAACCATTTGACTTGTTGCTAGCTTAAAGCTTTATATTGTACATTCTTAACAATGCCAGTGAGCTCCACTTACCCTGCACAGAGTATGTTTTGAGGGGCTGCAGAGAAGGGGCCGATGACTCAAACATGCTTTAATTCAGTGTGGGAGTAGTGTGGTGCTTGCCCTACATACGTTTTAATTTGGATCCTGGAAATCTACATCTTTCTCAATAAAACCTGTGATGTTCTTTTTTCAAGA

Function

GO: NA

KEGG:

id description
K02737 PSMB5; 20S proteasome subunit beta 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153433 lncRNA downstream 189470 12356401 ~ 12356891 (-) True G113828
TU153431 lncRNA downstream 189665 12356334 ~ 12356696 (-) False G113828
TU153403 lncRNA downstream 190280 12353843 ~ 12356081 (-) True G113810
TU153383 lncRNA downstream 317023 12228979 ~ 12229338 (-) True G113806
TU153376 lncRNA downstream 337391 12208532 ~ 12208970 (-) True G113799
XR_005640653.1 lncRNA upstream 31958 12585529 ~ 12600592 (-) True LOC120568043
TU153583 lncRNA upstream 47609 12601180 ~ 12608569 (-) False nedd8l
TU153585 lncRNA upstream 47609 12601180 ~ 12608569 (-) True nedd8l
TU153660 lncRNA upstream 204080 12757651 ~ 12759273 (-) True G113933
TU153687 lncRNA upstream 236268 12789839 ~ 12793027 (-) True G113945
XM_039816603.1 mRNA downstream 31731 12360983 ~ 12514630 (-) True LOC120568866
XM_039815464.1 mRNA downstream 218321 12230121 ~ 12328040 (-) True carmil3
XM_039816553.1 mRNA downstream 338691 12176857 ~ 12207670 (-) True rem2
XM_039815524.1 mRNA downstream 394280 12131437 ~ 12152081 (-) True tgm1l1
XM_039816570.1 mRNA downstream 424283 12116802 ~ 12122078 (-) True dad1
XM_039815226.1 mRNA upstream 47609 12601180 ~ 12602921 (-) False nedd8l
XM_039816231.1 mRNA upstream 63049 12616620 ~ 12621709 (-) False homeza
XM_039816232.1 mRNA upstream 63049 12616620 ~ 12621709 (-) False homeza
XM_039816227.1 mRNA upstream 63049 12616620 ~ 12621709 (-) False homeza
XM_039816228.1 mRNA upstream 63049 12616620 ~ 12621709 (-) True homeza
TU153382 other downstream 328094 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 1657409 10887089 ~ 10888952 (-) True LOC120567758
TU153067 other downstream 1657514 10887007 ~ 10888847 (-) False LOC120567758
TU152848 other downstream 3035880 9507048 ~ 9510481 (-) False LOC120568397
TU152847 other downstream 3050609 9401742 ~ 9495752 (-) False LOC120568397
TU153584 other upstream 47609 12601180 ~ 12602909 (-) False nedd8l
XR_005640810.1 other upstream 207344 12760915 ~ 12768625 (-) False LOC120568934
TU153973 other upstream 530990 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 2060042 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 2242347 14795918 ~ 14797044 (-) True G114680

Expression Profile