RNA id: XM_039816179.1


Basic Information

Item Value
RNA id XM_039816179.1
length 6666
RNA type mRNA
GC content 0.49
exon number 50
gene id LOC120568580
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13440689 ~ 13465710 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCCTTCATATTGAGACAGATTCAAGAGGGTGTCGAGACAAACAGCAGTTCTACAGCAGGCTAAAAGAGTGGACATTAATGAAGATCAGTGATTAAAACGGCTGTTAGTGAGTAGGAACGCTGTGAATCGGTGATGCTGAGAAAGGGGGAGTGGGTATGGATGGACTCAGACATCGGGGTTCCCATCGGAGCGAGGGTCAACGTAACACCATCTGGTCAGCGGTTACTGGTGGACGATGATGGAAAGAAGCAGAGCCTGTCCCAGGAACAGGAAGCCTCTCTCAGGATCATGCACCCTACGTCAGTGGAGGGTGTGGATGACATGATCAAACTGGGTGACATGACCGAGGCCGGCCTCCTCAGGAACCTGCTGCTCCGACACAAACAAGGCATCATCTACACCTACACAGGCTCTGTGCTGGTGGCAGTGAACCCATACCAGGATTTCCCTTTATATTCAGTTGACCAGGTGGCGTTGTACCATGGTCGAAAGCTGGGGGAACTCCCTCCGCACATCTTCGCCATCGCTGAATCCTGCTACTGTAACATGATGCGCCATCTCAGGAACCAGTGCTGCATCATCAGCGGGGAATCAGGAGCAGGAAAGACAGAGAGCACTAAGCTGATCCTGCAGTACTTGGCAGCAGTCAGTGGTGAGCTCTCTAAACAGAAGATTGAACAGCAGATCCTGGAGTCTAACCCAATACTAGAAGCGTTTGGAAATGCAAAAACAGTCCGCAACGACAACTCCAGTCGCTTTGGGAAATATTTGGAGATCTTCTTCAATAAGGACGGAGCAATTGAAGGTGCTCGCGTGGAGCAGTATCTTCTGGAGAAGTCTCGTGTCTGCCGTCAGGCCCTAGAGGAGAGGAATTACCACGTATTTTACTGCATGCTGGCAGGAGTCACAGCAGAGGAGAAGAAAACCTTGAGCCTTGGAGATGCTGTGGAGTACGCATTCCTTTCTAAGGGCGGCCACACCATCTGTGAAGGCAGAGATGACGCTAAAGACTTTAAGCGTATTCGTTCTGCGATGAAAATCCTGACCTTCTCAGAAAGCCAGTGTCAGGAAATCCTCAAGCTGCTGGCAGCCATATTACACCTGGGAAACGTCTGCTTCCAAGCCAACACACAAAATAACTTGGAAACCAGTGACATCAGCAAGTCAGAACACTTCAGCATAGCAGCATCAATACTGGAGGTAAAAAAGTCTTCCCTGGCGACGAGTTTGACCCATCGTTCCTTTATGaccaacagagagagagtgaccaAACCCCTCAGCTCTGAACAGGCGTCTGACTGTAGAGACGCCTTTGTCAAGGCGATCTACAATAAGCTGTTCATATGGATCGTTGAGAAAATCAACAGTGTCATCTATAAGAAGTTGACCAAAAACCCCAAATCCTTCCTGTCCATCGGCCTGCTCGATATCTTTGGCTTTGAGAACTTCAAAACAAACAGCTTCGAGCAGCTGTGCATTAATTTTGCCAATGAGAAGCTGCAGCAGTTCTTTGTGGGCCACATCTTCAAGCTGGAGCAGAAGGAGTACCTGAAAGAGGACATTGTGTGGAATAACATCAAATTTAGTGACAATCAGAACGTCCTGGACATTCTGGCTGTGAAACCCTGTAACCTGCTGGCTCTGATCGATGAAGAAACCCATTTTCCAAAGGGCTCAGACTACACTATGCTGATCAAGATGAATGTACAACACCGTGGGAACAAGACTTACATTGCCTCCAAAAGTGAACATGACACAGACTTTGGGATTCGCCACTTTGCAGGCGTGGTTAACTACGACTCCAAAGGGTTCCTGGAAAAGAACAGAGATGCTGTCAGTTTTGACATAATCAAGATGGTTGAAATGACCACCAATAAGCTGCTTCATCAGATATTTGAGAGTGAGCTTTCAACCAATGGATTGAAGATCACTAACAACAAGAAGGTCATCATTACACCTAAGAGCTCTCTACGGGCCCAGAGTGACAAACGTAAACAAGTGGCGACGCTGAGCGGTCAGTTCCGTCAGTCTCTGGACTCCCTCATGAAGGCTCTGTCTGCCTGCCAGCCTTTCTTCATCCGCTGCTTCAAACCCAACAATGAAAAGCAGTCTAAGACTTTTGACAGAGAGCTGTGTATGCGTCAGCTGAGATACTCCGGCATGATGGACACCATCCGCATCCGGAAGCTGGGATACCCAATTCGCCACACCTTTGCGGAATTCCTGAAGCGCTACAGGGTGCTCCTGACGACGACCGTCTGTGACCCCAAAACTGTTAGTCCTGATGTGATCTTCCTGAGGGATGCCCATGACGCCGTACTGGAACGACTAAGGGAACAAAAACTCAGCAGGATAGCTCTGGTGATCCAGAGGGTCATGCTGGGACACAAAGACAGAAAGTCTTTCCTGAAGAAGCGGAGGGCAGCTGTGGTGTTGCAGAAGCACTGGAGAGCTTACAGACAGGAGCAACTGCGAAGAAAGCTCCGGCACGGCTTTGAGCGGCTGGCATCAAAGATCCGCAGTCGGAAGCTACGGTTACAGTACCTAAGACAGCGAGCAGCAGCCCTCACCATACAAAGCCAGGTTCGTGGCTACCAGGCCAGGAAGGGCTGGAAGCAGAAGAGAGAGGCAGTCATACTGCTGCAGGCTTACAGCAGAGGACTCCTGGCCAGAAGAAGAGCTCAAAAGATGAGGGGTGATGCCTCCCTTTTACACCTGGAGAAAGCAAAACAAGAGAAGATAGCTTTGGAGCTTGAGCAGCGTCTGAAGGTTATCGCCTTGTCACAACCAGCTAATGAGGAGCCTGAGCCAATCGTTGAACACGATTCAGAGGAGAGCACGTATGATCTCACGCCTCCTGTGGAAGTGGTAGAACTGAAAGCACCTGAATCCGATAATTATCAGCAGAGGAGGAACGTGCCAGAGCCGGTGAAGGAAATCTCTGATGAGATCTCAGAGCTGGAAATCATCGCTGCAGCCTCAATTTCAACAACCCCCACCCCATCGCTGGAAGAGGACGAAGACGACGAGTTTGATGACGGCAGTGATGAGTTTTCGTTCTACAAATTCAGCATCCTTAACTTCCAGAGCAACCACAGCCACACGCACATCAACCAGAGAATCAGGCAGCCTCTTTTGCCCCACGATGACGAGGGCGACATACTGGCATGTCTGACTGTATGGTGGATTATACTGCGTTTCATGGAGGACCTGCCGGAACCAAAATCTATGGACGCGATGTCTCAAGCATCCAGCACCATCTCGCGTAATCTGCCTCAAAGGCAGGGCAGGAGGCTGAGCAGCCTGGTGGGACTGGATCAGAAAATACTGAGGAAGCACAAGAAAAAGATCGGAGTTGGAAACAGAAAAGCTTCTGTAATTATTGAGGAGCCAGACAACATTACAGAGGACGAGGACATTTTGGTTGGAGAGGGTCCGACACTGGATCGGCCACTTACATCCGTGGAAAAACTACACATTATCATCGGATACGCTCTATCGAGACGAGACATAAGGGATGAGATTTACTGCCAGATCTGTAAGCAGCTGGTGAACAATAGGAACAAGAGGAGCCGTATGCAAGGCTGGACCCTTCTTTCCATCTGTCTCGGGATCTTTCCCCCAACAGACCTCTTCATGAAGTATTTGGAGAATTTTGTCCACAGGGAGCCAAGTGGTTATGGAGAATACTGTACTGGGCGCCTGCGTCGTATAATAGCCaacggagaaagaaaagagttgCCCTGTTGGCTCGAGCAACAGGCTGCCAAATCTAAGGAGCCCATAGATGTGTCTGTGAATCTACTGGACGGCCGCAATATCAGTGTACAGCTGGACTCGGCTTCCACCTCTGCTGAAGTCTGTCAAGCTGTGGCTGACAAGATTGATCTTCGAGACATATATGGATTCTCCCTGTACATCAGTCTTTATGAAAAGATGTGGTCTCTGGGCAGCTGTGGGAAGCATGTGTTTGACGCAGTGTCTCAGTGCGAGCAGGAAATGAGGAGGCAGAGCAAAGATGAGAAGGACGCCCCCTGGCAGCTCTCCATCCGAAAGGAACTGTTCACACCCTGGCATGACTGCTCAGTTGACCCAATCAGCACAGATCTAATCTACAGACAGGTCATCAAGGGAATCAAGTCTGGAGAGTACATCAGTGACAAGGAGGATGATTACGTCCAGCTGGCAGCAAAGCACTATTACATCCAGTTTGGCTCTGCATACAACAAAGACAACGTCCAAAAGGTGGTTGAGGAGTGCATCGAAACCACACTTATTGAGAACAAATCTATGACAAAGTGGATCCAACTCATAAGCGAAGCACACTTACAGGGTCCCTATGTCAACGGAAGGCAGAAAACAGACAGTGTAAAAGGAGAACTGGTCAACAGCGCCCAACACATATGGCCTCTGCACTTCTCTAAGTTTTATGAAGCTACAATGATGTCAGGACCTCCTTTGCCTAAAAGCAGGTTTGTTGTGGCTGTAAACTGGAATAGCATCTTCTTCATGGATGGAAGAGACAAGAGACTCCTTGAGCTTTCCTACCTAGAGGTAAAGGACATACACATGATCAGTGACAGCCATGTCAGTGCTCAGTCAGTAAGTTTGGCCACAGTCAAAGGAGAGTTTGTGCTGAAGTCTGGGGAAGCTGTGGACATGGTTGCAGTTATAGAGAAAAACCTGAAAGGGCTGAGACAGCGCTCAGTGTATGCAGTGGCTCGGCATGATGCCAGTAAACCAGATGACCCCACATTCCTGGTTTGTAAACGAGGGGACCTGCTGTTGGTAGAGAAAGATGAAGAAAGTTCTTCTGATAAGAACTTGATCAAAGCAACCAACAATCGGACCAGCGCCACCGGTGTGGTCTACAAGGATACAGTGCAGTTTCTGCCGACTCTAGAGAAGCCCACTAGCGATTTGCTGGAACTGATCAGCCCAGGCCAAAGGAAACTTTCAGTAGCACAAAACACCCTACCTATTTACGAAACAGTGGCTCCTGTCTCTTTAAAAGAGTTTGCACTTGAGAACTTCAGGCCTGCAGGCCCTGTCGGTCGACATGGTGCGTCCAAAGGGGTCAGCAGGGAGAAGCTGTGGGCTAGTTCAAGAGAACCTCTCAAACAGCCACTGATGAGGAGCCTGGTCCGCAACTCTGACCTCAGCAACCTGGCCTGCAACGCTTTCACTGCTATCCTGAAGTACATGGGCGACTACCCCATCAAACACGCTCGCAGTCCTTTAGAGCTGACTGACCAGATCTTCGGTCCGGCCACCCAGCATGAAGCTCTGCAGGACGAGATCTACTGCCAAATTATGAGACAGatgaccaacaacaacaacagGTTGAGTGTGGAGCGTGGGTGGCAGCTCATGTGGCTGTGTACAGGCTTGTTCCCGCCCAGTCCGGATTTAATGAGACACACTCAGAGCTTCTTGGAGTCACGGCGCAGAGACCAGCTGGCTCCTGACTGCCTGCAGAGGCTGCATGCGATGCGCAGTAAGGAGCCCAGGACGCTTCCCTCTCATTCGGCAGAAGTGGACGCCATCCAACAGAACAGCACCCAGATCTTCCATAAAGTCCACTTCCCAAATGACACAAGTGATATATTGGAGGTGAAATCGACGACCACAATCAAAGACCTGTGCTACAGTATTGCCTCTAAGCTCAAACTGAGCTCAGCTGACGGATATGGCCTATACCTAAAAACTGCAAACAAGGTCACAAGCTTGCAGGAGCAGAAgtatttttttgacagtttaagGCAGACTTCAGAGATTCctaagaaaggaaaaaaagcgaAGGAAGGCAACCAGGCCAACGTGCCCTACCTGGTGATCTTTAAGAGGAAGCTCTGGTTCAACGTGAGCCCGGGGAAAGACCTGGTTGCAGACCTCACTTTCCATTTCCCACAGGAGCTGCCTAGGTACCTGCGTGGATACCACAATTGCACCAAAGAGGAGATGATTAACCTGGGTGGGCTACTCTTCAGAGCCAAAGTAGATTCAGACAGGTCGCAGTTTGTCATGATCCCCAGAATGTTGAAGGATTTGGTTCCTGCTGACCAGTTAAAAATCATGTCCCCTGAAGAATGGAAGAAGCACATCATCTCTGCCTACAACAAGCAGAGTGGCATGACTTTGCAAGAGGCCAAAGTTGCCTTCTTGAAAGGCATTTCGGTCTGGCCAACCTTTGGCTGTGCCTTCTTTGAAGTTAAACAAACGTGTGAATCTAGCTACCCAAATACAGTTTTGATCGCCATCAGCAAGCAAGGTGTCAGCTTATCAGACCCAAATACAAAGGAGCTGCTGGTTATGCACCCGTTCAGCCGCATCACAGAGTACCAAAGCGAAGGCGGCTACTTTGAGATGACCATTGGCACCCTGGTGAGGGGCAACATCTTTGTCTGTGAAACCCCTCAGGCCAACACAATGGAGGACCTTCTTAGATCCTATGTCACTATGTACGAGAGGCAGACAGAGGCCTTTCGAACAAGGAATACCATGTTTTCCTGAAGCTTTAAGGGCAAAAGAATAGACTGAGCCGCTGTGATTTATATGCACTCTTGATcaatatatgtatttgtgtacTTTAAATGGCACATTTGTGCCCAATAGATATTGCTTCTACTAAACAAGATAGagatattaaaatgtaagtCATGTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154072 lncRNA downstream 33859 13405234 ~ 13406830 (-) False G114215
TU154070 lncRNA downstream 34529 13394461 ~ 13406160 (-) True G114215
TU154071 lncRNA downstream 44321 13394461 ~ 13396368 (-) False G114215
TU154049 lncRNA downstream 151696 13288182 ~ 13288993 (-) True G114202
TU154045 lncRNA downstream 153469 13286651 ~ 13287220 (-) True G114199
TU154064 lncRNA upstream 3821 13469531 ~ 13472351 (-) False dis3l2
TU154088 lncRNA upstream 67428 13533138 ~ 13549466 (-) True LOC120568710
XR_005640752.1 lncRNA upstream 70764 13536474 ~ 13549442 (-) False LOC120568710
TU154108 lncRNA upstream 90894 13556604 ~ 13564803 (-) True G114247
TU154127 lncRNA upstream 157193 13622903 ~ 13625479 (-) True G114256
XM_039816491.1 mRNA downstream 3240 13421548 ~ 13437449 (-) False LOC120568786
XM_039816490.1 mRNA downstream 3241 13421548 ~ 13437448 (-) False LOC120568786
XM_039816489.1 mRNA downstream 3242 13421548 ~ 13437447 (-) True LOC120568786
XM_039815498.1 mRNA downstream 78647 13354229 ~ 13362042 (-) True LOC120568167
XM_039815497.1 mRNA downstream 107684 13326841 ~ 13333005 (-) False ednrba
XM_039816180.1 mRNA upstream 3944 13469654 ~ 13482225 (-) True dis3l2
XM_039815730.1 mRNA upstream 103639 13569349 ~ 13575574 (-) True si:ch211-252f13.5
XM_039816531.1 mRNA upstream 129468 13595178 ~ 13619698 (-) False LOC120568814
XM_039816529.1 mRNA upstream 129468 13595178 ~ 13619698 (-) False LOC120568814
XM_039816527.1 mRNA upstream 129468 13595178 ~ 13619698 (-) True LOC120568814
TU153973 other downstream 352126 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 672064 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 837780 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 1222422 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 2551737 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 1147903 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 1330208 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 1824476 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 1824476 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 1945452 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile