RNA id: XM_039816184.1


Basic Information

Item Value
RNA id XM_039816184.1
length 1633
RNA type mRNA
GC content 0.52
exon number 10
gene id nsun4
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33949596 ~ 33955044 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttttttgctgtcgGGGAAGACGGAACGAAGAACTGTCGCACTGCATGATGGCGCTGCTCTTAAATTCTAGGCTTCTACTAAGAAAAGTTAAAGATTTAAGGTGTTTAACGCCAAGAAGAAACCGAGTGAAGGAAAAATGGGCTGTCACACGTACCAAGCACCCTCCCACCAGTCTGGCCCTGCAGCACTTTGACGCCACCTACAGCGTCcagctggggcagctgtggccATCAGTCCGCGCTGCCTTGCTGTCCGAGAGGAAATACGGAGCCCTGCTCAATCATTTCTCCCACGATGCTGTTCTGGCAGACCTCGAAGCCCAGGGATGCAGGGACTTCCTCGGTGACACAGCTACAAAAACTCAGCCATGCTTGGAGCAAAAACCTGAGGTTGCAACCGAGGAGGAATCCGTTTCTATGAAGAAATGTGACAGCGATAGTGAGCAGCTACCTCCTCTACAGCTCAGTCCTAACATCAAGTGTCTAGTGTTTCCTAGAGGGGATATCACAAGATTCAAGCCTGCTAGACCAGACATGTGTGGCTTGTTGGGTTACTATCTGATGGACGCAGCGTCTGTGTTGCCGTGTCTAGCCGTCCAAGAAGGACACAATGTGCTCGACCTGTGTGCCGCTCCCGGAGGCAAGACCCTGGCTTTACTTCAGAGCCAGGCTATAGGTTTTTTGTGCGTAAACGACGCCTCGGTGTCTCGGACGCTGCGGCTGAGGAAAGTCCTCCACAGCTACGTCCCTAAGCCGCTTTTGACGGACGAGAAGCTGCGCATCACCTCTTTTGATGGCACCAAGTGGGAAATCGAAAGGAACACATTCGACAGAGTCCTTGTTGACGTCCCCTGcagcacagacagacattcaCTCATGGAGGACGACAACAATGTATTCAGTAAGAGCAGGACCGGTGAGAGACGGAAGCTGCCAGAGCTgcagctggagctgctgctGGCGGGAATCGAAGCAGCTTGTCCAGGTGGGGAGATCCTTTACTCCACCTGCACACTCTCTCAAATCCAGAACCTGGGTGTGGTGGAACAGGCCGTCTACTTGGCTCGAGAGAACCGCGGCATCCAGCTTCAAGTTGTCGATCTGCGACCCCTCACACACATGTTTAGGAAAACCTTTCACTTTGCGCCCGACCTCCCCCTGGGTGAGATGGTCATCCCCCACTTAGCCGCTAACTTTGGCCCCATCTACATGTGCAAGCTGCGGCGGCTCACATAGACGGTGGACCGGTGCTGAAGCTTGTGGACATTTGAACGACCGCGTTGCAGCTTTCATGGACTAACGAGATGACCCTCTCTCAACCGTAGCTGTTGGAGCACAGCTGAAGGAGAACTTTTAATCGCCGTGGTGGAGTGCCGAATCACTggacagaaaacacaaagaatCCAGTTCAAGGACCTGGACCGTGATGTTATTGGAGACGTATCACCATGGTATTTTGTGGAGGCCAACCCACCTCCGCAAAAAATATCAAACTCCAACTGTTTCCTTAATGctttttctttaaaggtcccatggcatgaaaatttcacttttatgagttttttttaacattaatatgcattccctgagcctgcctatggtcccccagtggctagaaatggcgataggtgt

Function

GO: NA

KEGG:

id description
K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161686 lncRNA downstream 402 33948520 ~ 33949194 (-) True G120052
TU161672 lncRNA downstream 95922 33830803 ~ 33853674 (-) False G120039
TU161673 lncRNA downstream 95922 33846996 ~ 33853674 (-) True G120039
TU161666 lncRNA downstream 126013 33808520 ~ 33823583 (-) True G120034
TU161645 lncRNA downstream 181817 33762761 ~ 33767779 (-) True G120016
TU161740 lncRNA upstream 82866 34037910 ~ 34038115 (-) True G120096
TU161811 lncRNA upstream 252472 34207516 ~ 34207796 (-) True G120150
TU161836 lncRNA upstream 270974 34226018 ~ 34227413 (-) True G120166
TU161843 lncRNA upstream 279462 34234506 ~ 34234711 (-) True G120173
XR_005640833.1 lncRNA upstream 281372 34236416 ~ 34243899 (-) False LOC120569054
XM_039816820.1 mRNA downstream 88308 33858570 ~ 33861288 (-) True gadd45aa
XM_039816858.1 mRNA downstream 269809 33664713 ~ 33679787 (-) True dipk1aa
XM_039816916.1 mRNA downstream 300079 33645095 ~ 33649517 (-) False gfi1aa
XM_039816917.1 mRNA downstream 301232 33645095 ~ 33648364 (-) False gfi1aa
XM_039816915.1 mRNA downstream 301232 33645095 ~ 33648364 (-) True gfi1aa
XM_039816187.1 mRNA upstream 2975 33958019 ~ 33976815 (-) True pif1
XM_039816188.1 mRNA upstream 2975 33958019 ~ 33976809 (-) False pif1
XM_039814539.1 mRNA upstream 53847 34008891 ~ 34034308 (-) False LOC120567625
XM_039814537.1 mRNA upstream 53847 34008891 ~ 34034308 (-) True LOC120567625
XM_039815368.1 mRNA upstream 90954 34045998 ~ 34100666 (-) False st3gal3b
TU161606 other downstream 290320 33654302 ~ 33659276 (-) True G119989
XR_005640728.1 other downstream 692660 33219724 ~ 33256936 (-) False LOC120568437
TU161146 other downstream 1097199 32849719 ~ 32852397 (-) True G119631
TU161133 other downstream 1117103 32828385 ~ 32832493 (-) False LOC120567697
TU161094 other downstream 1184520 32762447 ~ 32765076 (-) False fcer1gl
unassigned_transcript_565 other upstream 229972 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161838 other upstream 273582 34228626 ~ 34229050 (-) True G120168
TU161906 other upstream 445779 34400823 ~ 34404013 (-) False G120230
unassigned_transcript_566 other upstream 813397 34768441 ~ 34768514 (-) True trnan-guu_9
TU162119 other upstream 940535 34895579 ~ 34895913 (-) True G120390

Expression Profile