RNA id: XM_039816188.1


Basic Information

Item Value
RNA id XM_039816188.1
length 2284
RNA type mRNA
GC content 0.55
exon number 13
gene id pif1
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33958019 ~ 33976815 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGGCTATTGGCTGAATTCACGCAGCGACAATTTGAAAATCGGTGCTCGCGTTCCCGGAGTGGGGCAGCAGCTGCACGGAAAACGGAACAGAGACAAAGATTCTAACCTGTTCTAAAAACAAAGTCGCTGCGATGTTATCCGGGGAGGACGGCGGCCAGCTGCAGTGCTGTGTGACGGTGGAGCAGCTTAACGCCTCCGGCCAGGCCACCCGGAGGCAGGTCATCCGTAAAGCCTCGGTCGTCCTGGGCCGGAATGAGTTCCACGAGATTATCCTCCGCGTCCACGACGGGAAAGTGCCGCAAAATTACCATTTGAAAGAATTCAAACTTTTCACCAAGTTCGCCAGAGAAGGGAAGTGCACCGTCAAACTGCTGCCCGAAAACACCCAGGTGCTCATCTCCAACTGCCCCCCTGACCGGCTCAACCTCTTCCTCAAAACCCTGAGCGTCAAACACCAGGCCCGGCAGAGCAGCAAGCCTCTGAGCGGCCGAGAGAAGCTCAAAGCCGGTCTGCCCCGCAGCTTCGAGGCCATCAGCCCCCTGCAGCAAAAGGACATCCAGAAGGTGAATGAGCTGAGGGGTAAAGTGGCCCCCACAGGGCTGGCGGAGCGCACCAATAAGATGACCCGAGCAGGAACAGGACAACAGGTCAAAAGGTCCAGGAGTGACACGAACTTCAGCCCAGTAAAGGCCAACCCGAGCAAGAAGCCCATCCTGTCTCTACCAACACGTAAGCTGAATAAAGAACAGGCGGCTGTCCTCGGTGCAGTGCTGAGTGGCAAGAACATCTTCTTCACTGgaagtgcaggtACAGGAAAGTCCTTCCTCCTGAAGAGAATCATGGGATCTCTTCCTCCAAAGAGCACATTTGCCACAGCCAGCACAGGAGTGGCTGCCTGCCACATTGGAGGAACAACATTACACAACTTTGCTGGCATTGGCTCCGGCTCGGCCCCGCTGGAGCAGTGCATCGAGCTGGCTCAGAGGCCCGGCGTGCTGCAGCACTGGACCAGCTGTCGACACCTCATCATCGACGAGATCTCCATGGTGGAGGCCCAGTTCTTTGACAAGCTCGAGGCGGTGGCAAGGTCGGTTCGGAGGTCTACGGCGCCATTTGGAGGCATCCAGCTGATCGTGTGTGGCGACTTCCTCCAGCTGCCTCCTGTTTCCAAGGGAAAGGAAAGAGCCAGCTTCTGCTTCCAGGCCAGGAGTTGGCGCAAGGTCATCCAGGTGAACATGGAGCTAATGGAGGTGCGGAGGCAAACGGACCAGTCCTTCATCTCCCTCCTGCAGTCTGTGCGGGTGGGCAGGGTGACGGAGGAAGTCACGGCGACGCTGTTGGGAAGCGCCTACCACCACATCGAGAGGGATGGCATCCTAGCGACCAGGCTGTGCACACATAAGGACGACGTGGAGCTCACCAACGAGATGAAACTCCAGCAGCTGCCTGGGTCAGTGCGTGTGTTCGAGGCTCTGGACAGTGACCCAGCCCTGGTGAAGGCCATCGACGCTCACAGCCCCGTCAGCAAAGTGATCCACCTCAAAGTGGGGGCTCAGGTCATGCTGACGAAGAACCAGGATGTCTCTCGAGGTCTGGTGAACGGAGCGCGGGGGGTCGTGGCCTTTGAGTCTGGAAAAAACGGACTCCCACATGTGCGTTTCCTGTGTGGCGTCACAGAGGTGCTGAAGCCGGAGCGCTGGGTGTTTAAGTCCGGCGGGGGGGTCCACCTGAGTCGACAGCAGCTGCCCCTCAAACTGGCCTGGGCCATCTCCATCCACAAGAGTCAGggAATGACCCTTGACTGTGTGGAGATCTCTCTGGCGCGCGTGTTTGAGAGCGGCCAGGCCTACGTGGCGTTGTCTCGGGCTCGGAGCCTGCAGGGTCTGAGGGTCATGGACTTTGACCCCCGTGTGGTCAGGGCAGATCCAGACGTTCTTGTCTTCTACAAGAAACTGAGGAAAGAGAGGCTGCTCATGCAGGCCTCCATGGATGACTTTTTCGGCAACAGCAACAAAGAAAACTCTTGAAGGTGAATTAATCTTCATCCTCTGTGACATTATGCACCGTGTGCATGAGTTAGCATCTGGTTTTATTTCTCTTGGGACAATTTGCTTTTCTTAAACGACTGCAACCAGACAACTTCACGGTTTCTCTTTTAACCGGCAGCACTTACTGCCACCTTCtggtcatgtgttttttttaagagctTATTTTtatgctttatttttaatttattatcatGATTGTTGGTATGTTTTCCAATAAAGTTCTAGTCAACCTCTA

Function

GO:

id name namespace
GO:0000002 mitochondrial genome maintenance biological_process
GO:0006310 DNA recombination biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161686 lncRNA downstream 8825 33948520 ~ 33949194 (-) True G120052
TU161672 lncRNA downstream 104345 33830803 ~ 33853674 (-) False G120039
TU161673 lncRNA downstream 104345 33846996 ~ 33853674 (-) True G120039
TU161666 lncRNA downstream 134436 33808520 ~ 33823583 (-) True G120034
TU161643 lncRNA downstream 190240 33764967 ~ 33767779 (-) False G120016
TU161740 lncRNA upstream 61101 34037910 ~ 34038115 (-) True G120096
TU161811 lncRNA upstream 230707 34207516 ~ 34207796 (-) True G120150
TU161836 lncRNA upstream 249209 34226018 ~ 34227413 (-) True G120166
TU161843 lncRNA upstream 257697 34234506 ~ 34234711 (-) True G120173
XR_005640833.1 lncRNA upstream 259607 34236416 ~ 34243899 (-) False LOC120569054
XM_039816184.1 mRNA downstream 2975 33949596 ~ 33955044 (-) True nsun4
XM_039816820.1 mRNA downstream 96731 33858570 ~ 33861288 (-) True gadd45aa
XM_039816858.1 mRNA downstream 278232 33664713 ~ 33679787 (-) True dipk1aa
XM_039816917.1 mRNA downstream 309655 33645095 ~ 33648364 (-) False gfi1aa
XM_039814539.1 mRNA upstream 32082 34008891 ~ 34034308 (-) False LOC120567625
XM_039814537.1 mRNA upstream 32082 34008891 ~ 34034308 (-) True LOC120567625
XM_039815368.1 mRNA upstream 69189 34045998 ~ 34100666 (-) False st3gal3b
XM_039815370.1 mRNA upstream 69189 34045998 ~ 34100648 (-) False st3gal3b
XM_039815371.1 mRNA upstream 69189 34045998 ~ 34094212 (-) False st3gal3b
TU161606 other downstream 298743 33654302 ~ 33659276 (-) True G119989
XR_005640728.1 other downstream 701083 33219724 ~ 33256936 (-) False LOC120568437
TU161146 other downstream 1105622 32849719 ~ 32852397 (-) True G119631
TU161133 other downstream 1125526 32828385 ~ 32832493 (-) False LOC120567697
TU161094 other downstream 1192943 32762447 ~ 32765076 (-) False fcer1gl
unassigned_transcript_565 other upstream 208207 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161838 other upstream 251817 34228626 ~ 34229050 (-) True G120168
TU161906 other upstream 424014 34400823 ~ 34404013 (-) False G120230
unassigned_transcript_566 other upstream 791632 34768441 ~ 34768514 (-) True trnan-guu_9
TU162119 other upstream 918770 34895579 ~ 34895913 (-) True G120390

Expression Profile