RNA id: XM_039816189.1


Basic Information

Item Value
RNA id XM_039816189.1
length 4473
RNA type mRNA
GC content 0.50
exon number 6
gene id mpz
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32031652 ~ 32051435 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTTTTCTGTTGTTGTGAAGCCCTCTGTCCTAGCGGCCTGCAACCCCTCCACtcacactttctttctttctcctccttccactcactcactctcccTCCAGAGTGGGACTCTTCCTCGACAGACTCCTGTCAGGTCTGCAGCATCCGTCTTTTGGGAGCTCCCTAGAAGCCAGAAACCATGCTGACGTTTTTGGCGCTGGCGTCGGTTGTCCTCCTGGGAATAGTGCCTGAGCAGTCCCAGGCCATTATGATTTACACTGGCTGGGAGCGCCACGCCCTGGTGGGTGGCGACATCCGGCTGTCCTGCTCCTTCTTCTCCTGGCGCTGGACCTCGGAGGAAGTCACCTTCTCCTGGACATACAGGCCTGATGGCGCCCGGGACAGCATCTCTATCTTCCACTACACCGGTGGTGTGGCCTATGTGGACAACAAGGGCCCGTTCAGGGACCGGTTGGAGTTTGTGGGGAACCCGGGCCGCCGCGACGGCTCCATCCTGATCAAAAACCTGGACTACAACGACAACGGCACCTTCACCTGCGACGCCAAGAACCCCCCTGACATAGTGGGCCGGCCCTCCAGCGTGCGCCTGCTGGTCTTTGAGAAGGTGCCCATCCAGGCTGGTGTGATCACAGGCGCCATCATCGGGGTGGTGCTGGGCCTGCTGGTGCTCATCGTGGTCATCTACTACCTAATGAGGTTCCTGGTGGCGCGCCGCGTCTTCAGCCTCAGTGTCAGCAAACATggcaagaaaaagaaagagggatcACAGCAGAGACAGGGCCCCGTGCCTGCCGCCGACCCCTCGAAGGTGAAGGCGGCCGCCTCCGAAAAGAAGAAGCAGGAGTCACGCAAGGATAAGAAATAGGATACGGGGATGGGCTGGGGCGGGCTCGCCAGCCGGCTGCTCCAGCCCGTACGCCTGGCGGTGGCCAAGGCCCAGCCCAAGCATCAGCAGCGAACCGTAGCCAGAAAGACGGAGAGGGTGGTggtgggaggaggggaggagggccCGGGCCGGGTGCTGATGACCATCGATCTGGAGCTGACCCGCAAAAACGGGGAGGAGAGGCCTGGCGGCGAGGGAGGGATGGGGAGCTCCAAAGCGCTTGGCTTCCTCTCCCACATCGCCGACCAGCTCACCTTCACAAAATAAACCGATATAGGGAGGCGGGGGAGGCcaaaggggggggaggggtgacGGAGCTGTGGAGGATAAGAGAGTGGGCAGTCTACTGAGGAGACAGCAGGAGAGCTCAACCACAAACCTGCTTCACACCCACCACAACGCCAACCTGAGTCCCTGAATAAATGAGTCAAATCATATCTGCTCATGTCACAGGCTGATGACTGTAGACAAAGCTATACGGGACCCAGATCTTAAGATGTCATGATAATACACCAGCCGGCACCCCGAGtactttttgtcaggtcatAAGATATGCCATTTGAAGCGAGACCTCAAGACGGCTGGGTTTGATAACAAAATCTAAAAAGCTGCTCCCCGGGTTTTTTGCCTTTTCTGGTTTCTTCCATTGTGATCCTATCCACCGAAAAAAGCTTCCTCCAAGTGCGTCGGATACGCATCACAAATCCCAAGCTGCAGGGACAAGCcaatttgctttttttccccccagaggCGACATGTCAAACTCCAACTTCCTCCCCTCACTCTGATCTTCATTcttttttcatctccaatcccaTTTCTTCCTCTTTTACTGTGAATTTTCTGACTTTTCGTGTTAATTCAAATTACAAAGTGATTTATATGCTAACTGCTCTATCctgtttctcttcctctctctcacttccCTTCCCTCTTTTCCTCCATTTCTTTCTCCTGTAGATAAAGGTCTGACTTCTCCATGACTGCCTCCACTCCTCTAGTCTGCTCCCTCCTTTTCTGCCCAGCCTGATGCAACCCCCATTATTTCCCATTATCTCTAGTCTTTCAAGACAGCACTGGCTGTAAGAATAGTCCTACTATATCAGTGGCAACTgtgtcaaatatttttttacaatggCTGATTGGAGAACCTGTATGCACTCATTGGGCAAACTGTAAAACAGTTTAAGGCCTAACAACCCACATAACTTTCTTAAGAGAAACCTGAAAAGACATCCCTCTGTGTTTAGAGTCTCATGAATCTTCCCCCTTAATGTTTACgactcaatcacacacacacacacacacacacacacactgagcggAGCTGCGAGTGCACTCTGGACTTCagatagagaaaaagagagacggagaggaGAGTGATAGTGGGAGAGAAATATGATTCCTGCTCTCAGCCGGGCGTAGATAGAGGTTCAAGCCCTCGAGCTCGGGGTGATTCAATCCTTTCAACATTTGAGCTAATGGAGGTTGTCGGCCTGTCCCTGCCCTGGCTAAAGGGGGCTATTTCTGGCCCTATAAGAGCGTGCGGGCTTACTGTAACAGCTGCACATTTTTTAGCTAacaggggggtgggggtggtgtgagaaaaagaaagaggtgaGCAGGCCgggtagggtgtgtgtgtatgtgggggggTGCTGCTATGCTTTTTGTGCCTGAGTGCATGAGGCTGTCCGCTGTTGACCCGACGGCCGGTGACTGACAACCTGGAATGACGTCACGGCGCGTAGGGCTGGCGGGCGCTCTCAGGAGTCTGGCAAAAGGGCTTTACAGGAAGAGGTTCAACTTCTGTGCTCTCCGAGTTATTTTAGGTCCAGTTAATCTGCTCGCACGTTTTTCCCCTCGCCAACCCAGGGCTAATTATTTTAGCGTGTACTGGTAACGagatctctctctccatcttcatCTCCCTCCTCGCCTCCTGTGCTGTCTTCACTGCTTTGTTAGTCATCTCTGTTCGCATCTTGGGATTGACCTCCTTTCCTCCAAAACCCCTGTTTGATTCTCTCTGTCCTTGTGTCTTTGGCTTCCTttatctcttcctcttcctgtcgTCTTGCGACTCTGCGCTGCATTATTCCCCCACAGAAAAGGCCTATACACAATCCACTCCACTCTTTAAGCCTCTCCTTATCTGACTGCCAGGCCCACTGCTCAATGCtctgctcctctctcttctgtccttccttccttcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctccctcctcctccctcgttcttcttcttctccttttcaAATTTGATGACGGACATCtctgtctcccctccctccggCTTGCCCAATGATCAACGAACGCCCTCTCGCTTGCCCTTCAAAATGCCACCTCCCCCTATAGGCATGTCCCCCGCCAGCCCgccttccctctcttcctccgaCCCTTTACTGTGTTTCTGCCGGTTCCGATGCTAAAAATGCTCTCCTCTGCCCCTTAATGGCAAAGAGCGGAAACACATGGGCAGAAATCCGCCTTTGGTTCTCACTGAAGACGCCAAACAGAAACTTATAATCTAGCTAGCTCTATTCTGGTCGCAAATACGACGTGTgttttatgtatatgtgtgtctagttaaaaaatgagatttgctctaaagcaaaaaaaaaaaaacagcatgtcaCCCTAAGTAAAgaaaataagacattttttaCATGTGTACAAAGAAACATATGGAGAACACGTTTATCGAGGCAAGGAAGAAATGTAATTCTATCTGATGGAATATGTCATTATATTTCTGACCTTGTGTGTTATGGAAGGTACTGTGTGGCTGTCTCTAGTGTACGTTTTATTCCGAGACGTAGAGTAAATCGAGGTTTTCGTGCGGCGTCAGAGAGAATATTAGGGGTGGATAAGGGTTCAGTTATCCTTAGATTCAGTGAGCTGTGgctggggagaaaaaaaaggagaggaaggTGCTTGCTGTGGAAGAAAGCTTCGGAGGAAGAGACTTATCTGCCAAAAATCCATATGTATAACCACAGATGGTCTGCTCTTCCCCCAGAGCCTTCTTTTAAAGGTGCTTCTTCCCCAACCCTGTGCCAAAGATGGAATGCGATCTGTGTGCTTGACATGCAGGGTGGATAGTGTAGACTTGAATGTTCCTTTAAAATTCATAATGGCAATGGAGGTGCTAAAATCCACTTATTTATAACTGGAGATCTATTTCACTCGTCGCTGTTTAACTGTCCAGTCACATGGATTAGTTAgaatgttttcttctttttcagcAAAGCCACACAGACACCTGACATAAGACAAACAGCATTAAAAttgccttttaaaaatgttttatatgtaTTATGAACTGTATTAGTCATAGTTGCACAATAACATTCCTTTATTGGAAATGACTGGAGcttcttacattttttttttacatttattttaatgctTGTGATAATTCCAGAGCACTAACAACTTTTGATGACTCTGTATAATATGTTGTAAAGAGTAcgtaaataaaaattaaagccCCAAGCGCGGCTGCTGTCAACAGAAGACAAAGTAAACCCAGCTGAAAAATG

Function

GO:

id name namespace
GO:0043209 myelin sheath cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K06770 MPZ; myelin protein zero

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160760 lncRNA upstream 116051 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA upstream 116948 31912678 ~ 31914704 (+) True pip4p1a
TU160753 lncRNA upstream 188681 31838382 ~ 31842971 (+) True G119328
TU160729 lncRNA upstream 300362 31730145 ~ 31731290 (+) True G119306
TU160703 lncRNA upstream 388454 31641354 ~ 31643198 (+) True G119285
XR_005640633.1 lncRNA downstream 4622 32056055 ~ 32059373 (+) True LOC120567918
TU160858 lncRNA downstream 73131 32124564 ~ 32124915 (+) True G119398
TU160878 lncRNA downstream 289692 32341125 ~ 32341363 (+) True G119409
TU160886 lncRNA downstream 296688 32348121 ~ 32349713 (+) True G119415
TU160887 lncRNA downstream 313133 32364566 ~ 32364768 (+) True G119416
XM_039816638.1 mRNA upstream 15300 31942203 ~ 32016352 (+) True lig1
XM_039816639.1 mRNA upstream 15300 31942203 ~ 32016352 (+) False lig1
XM_039816640.1 mRNA upstream 92174 31929145 ~ 31939478 (+) True LOC120568893
XM_039814662.1 mRNA upstream 117077 31888908 ~ 31914575 (+) False pip4p1a
XM_039814661.1 mRNA upstream 162157 31866987 ~ 31869495 (+) False dnaaf6
XM_039814663.1 mRNA downstream 16130 32067563 ~ 32071312 (+) True LOC120567694
XM_039815958.1 mRNA downstream 23643 32075076 ~ 32115947 (+) True LOC120568430
XM_039816809.1 mRNA downstream 67520 32118953 ~ 32124498 (+) True sdhc
XM_039815394.1 mRNA downstream 77025 32128458 ~ 32216046 (+) False cadm3
XM_039815393.1 mRNA downstream 77029 32128462 ~ 32222813 (+) False cadm3
TU160769 other upstream 119045 31888928 ~ 31912607 (+) False pip4p1a
TU160764 other upstream 162859 31865755 ~ 31868793 (+) True dnaaf6
TU160672 other upstream 570744 31459864 ~ 31460908 (+) True G119257
TU160516 other upstream 831638 31198960 ~ 31200014 (+) False G119123
TU160502 other upstream 835419 31171217 ~ 31196233 (+) True G119114
TU160818 other downstream 16179 32067612 ~ 32071300 (+) False LOC120567694
unassigned_transcript_563 other downstream 74924 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160865 other downstream 137547 32188980 ~ 32226483 (+) True cadm3
TU160866 other downstream 137639 32189072 ~ 32226483 (+) False cadm3
XR_005640735.1 other downstream 401272 32452705 ~ 32455106 (+) False LOC120568569

Expression Profile