RNA id: XM_039816236.1


Basic Information

Item Value
RNA id XM_039816236.1
length 1923
RNA type mRNA
GC content 0.55
exon number 18
gene id fubp1
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16094008 ~ 16103715 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCCCGTGAATGTAACCGGCCATCTTGTCGCGCCGAAGAGGAGAAGAGCAGTGGATATGGCTGACTACAGCAGCGTGGCTCCCCCTTCCTCTAACGccggtggtggaatgaacgacGCTTTTAAAGACGCTCTACAGCGAGCACGACAGattgcAGCGAAGATCGGTGGTGATGGAGTTGCGGCACCCCCAACAAACGAGTTTGGCTACGGCGGCCAGAAAAGGCCCCTGGAGGACGCTGGTGGGTATTTTCCCATGCCTAACCTGAATATCGACCAACCAGAGACGAAGAAAGTGGCTACAAATGACGCCTTTTCAGGAATGGGAGGAATGGGTGGTCCAAGGTCAATATCAGAGGAATTCAAGGTTCCAGATGGAATGGTTGGATTCATTATTGGAAGAGGAGGTGAACAAATATCACGTCTGCAGCAAGAGTCTGGATACAGTGGAGGAATGCCAGATCGGTCGGTGACATTAACAGGAGGACCAGAATCCATCCAGGCTGCAAAGCGGCTACTAACAGAGATAGTTGAGAAGGGGCGCCCAGCTCCCGCTTTCAACCACAACGACGGCCCGGGAATGACGGTCCAGGAGATTATGGTCCCTGCCTCTAAAGCCGGACTCGTCATTGGGAAGGGAGGAGAAACTATCAAAAGTCTTCAGGAAAGAGCGGGAGTGAAGATGGTCATGATCCAAGACGGACCCCAAAACACAGGTGCAGACAAGCCACTCCGCATTTCAGGAGAACCCTTTAAAGTTCAGCAAGCCAAAGAGATGGTGATGGAGCTGATCAGAGATCAAGGCTTCAGGGAGCAGAGGGGCGAGTATGGTTCACGAGTtggaggagggggaggtggtggaggaggaggagacagcTTGGATGTTCCCGTCCCCCGGTTTGCAGTGGGAATTGTGATCGGCAGAAATGGAGAGATGATCAAGAAAATACAGAATGACACAGGTGTCAGGATTCAGTTTAAACCAGATGATGGCAGCACACCGGACAGGATAGCACAGATTATGGGTCCCCCTGACCAGGCTCAGCATGCAGCAGAAATTATATCCGATCTGCTGAGGAGTGTCCAGGCCGGCGGGCCTCCAGGGCATGGTGGTGGCGGCGGCAGAGGTCGTGGTCGCGGGCAGGGGAACTGGAACATGGGTCCCCCTGGTGGCCTGCAGGAGTTCACCTTCACTGTCCCAACCATGAAGACTGGCCTCATCATTGGAAAAGGTGGGGAGACAATCAAGGGCATCAGCCAGCAGTCCGGAGCCAGGATCGAGCTGCAAAGGAATCCTCCACCCAATGCTGATCCCAACATCAAAATGTTCACAGTTCGGGGCTCCCCTCAGCAGATCGACTACGCCAGGCAGCTGGTGGAAGAGAAAATTGGGGGACCAGTCACTCCAATGGGTGGCCCACACGGTCCACATGGAGGTCCAGGCCCACATGGTCCTCCTGGACCACCTGGACCCCCTGGGGCTCCCATGGGTCCATACAACCCTGGACCATACAACCAGGGGCCTCCAGGACCCCATGGTCCACCGGCGCCGTACCAGCCTCAGGGATGGGGCAATGGCTACCCACACTGGCAACAAGGACAACCTGATCCAAaTAAAGCAGCAGCCGATGCAAACGCAGCAGCGTGGGCAGCCTACTATGCTCAGTACAGCCAGCAGCCGCAGGCTCCCATGACCCCGACAAGTGGAGCTCCTGGCACGACTCAAACCAACGGCCAAGGTGACCCAcaggctgcaggtcagagtggACAGGCAGATTACTCCGAGGCCTGGGAGGAATATTACAAGAAAATGGGTCAACAGAGTCAACAACCTCAGGACTACACAAAAGCCTGGGAGGAATATTACAAGAAACAAGGTCTGTACTCCTGTCTTATGTTTTCATATTGAAAACTGTCAGAAGGA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155207 lncRNA downstream 65759 16031932 ~ 16032227 (-) True G115075
TU155193 lncRNA downstream 175530 15922204 ~ 15922456 (-) True G115061
TU155190 lncRNA downstream 176455 15918321 ~ 15921531 (-) True G115060
TU155189 lncRNA downstream 177001 15918321 ~ 15920985 (-) False G115060
TU155184 lncRNA downstream 251377 15843159 ~ 15846609 (-) True G115056
TU155339 lncRNA upstream 67758 16171473 ~ 16171811 (-) True G115175
TU155347 lncRNA upstream 70546 16174261 ~ 16174553 (-) True G115178
TU155348 lncRNA upstream 71643 16175358 ~ 16175706 (-) True G115179
TU155349 lncRNA upstream 72250 16175965 ~ 16177210 (-) True G115180
TU155343 lncRNA upstream 74364 16178079 ~ 16182446 (-) True G115176
XM_039816384.1 mRNA downstream 20772 16054259 ~ 16077214 (-) False usp33
XM_039816385.1 mRNA downstream 20772 16054259 ~ 16077214 (-) True usp33
XM_039816386.1 mRNA downstream 20773 16054259 ~ 16077213 (-) False usp33
XM_039815825.1 mRNA downstream 43918 16033282 ~ 16054068 (-) False zzz3
XM_039815826.1 mRNA downstream 44286 16033282 ~ 16053700 (-) True zzz3
XM_039816243.1 mRNA upstream 1057 16104772 ~ 16111436 (-) True slc25a24l
XM_039816245.1 mRNA upstream 1057 16104772 ~ 16111435 (-) False slc25a24l
XM_039816244.1 mRNA upstream 1057 16104772 ~ 16111433 (-) False slc25a24l
XM_039816248.1 mRNA upstream 34149 16137864 ~ 16143686 (-) True txndc12
XM_039815024.1 mRNA upstream 78939 16182654 ~ 16201257 (-) False cc2d1b
XR_005640845.1 other downstream 684927 15412986 ~ 15413059 (-) True LOC120569143
XR_005640844.1 other downstream 685519 15412393 ~ 15412467 (-) True LOC120569142
XR_005640843.1 other downstream 686146 15411663 ~ 15411840 (-) True LOC120569141
XR_005640842.1 other downstream 686639 15411162 ~ 15411347 (-) True LOC120569139
XR_005640597.1 other downstream 793376 15290186 ~ 15304610 (-) False mfsd8l2
TU155326 other upstream 40445 16144160 ~ 16148121 (-) True G115164
XR_005640638.1 other upstream 78939 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other upstream 78939 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other upstream 78939 16182654 ~ 16201257 (-) False cc2d1b
TU155443 other upstream 227238 16330953 ~ 16335932 (-) True LOC120568735

Expression Profile