RNA id: XM_039816241.1


Basic Information

Item Value
RNA id XM_039816241.1
length 3329
RNA type mRNA
GC content 0.48
exon number 16
gene id miga1
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16078487 ~ 16093938 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaaagtcacGCTAGATGGGCGCGTACTGCAGCTGAGTCCTTCACTCGGCAGCAGCTAAGGTCAGCCGGAGGAGGAGTAGCTAGAGTCTGTGGAGGAAACCTCAACATGTACCGCTCCAGCAGAATGGTGATGAGGATAAGAGAGTTGCCAAGTCATGGATAGATCGCCACAATGACACATGAGACCCTCAGAAGCTCCCAGCTGTCCGTCAAGGCGGCTGCCCTGCGCATGGTCGACCTATCGCTGTCCATGTACTGCTCTCTGGCACAGGTGAGTGTCAGCACAGGCACCAAGAAGCTGGTGGCAGCCACTGCCTTTGGGGCCGTCTCGCTCCTCTACCTCGCTCGCCGCTTCCAGAGGAGGAAGGGCAGAAAGAAGGCTCACTCACCTCAGTGGGAGCAGGCTGGCTTTGAGTTTTTGACCTCGGCCCCAGCAGAGAATGATAAAACCAGTCAAAACAACACTCTCTCCCTCAACTCCAAGAATGGCTACTCCTCTGGTCTGCTTCTCAACGCAGGAGACTACAGGAAACTGTCGGGGTCTCTGCTAAGCCTGGCCTCTGTACAAAGCATGAACTCGTCAAACAGTAACACCTGCGCAAATGAATCCATCTGGGACAGAGCGGGGGAAGCTGATAACTGCAGTGTGGTCAACTTACCTGTCACCACACCTGAAAACCTGTACCTCATGGgtaTGGATTTATTCGAGGAGGCTCTACGGCGGTGGGAGGAAGCGTTAACGTTCAGGAGCAGGCAGGGCGAGGATGAGGCCAGCTGTGCGTCCGTCAAAACGGGAGCTGGAGACGCCATCGCTGAGCAGAGCATGGAGGACGTCATCAGCACCGAGTTCATCCACAGGCTGAAGTCTCTGTTGCAGAGGGCTTACAGCCTCCAGGAGGAGTTTGAGGGAGTGTTGTGCCTGTCAGAGCCCTCGTCTCACAACAGCCAGGATAAAATGGCAGACATTTTGGCCAGAGAGGAGCTGGACGACGCATATCTGAGAGACAGTATGAGCATCGCCTCCACCGACTCATTTGTGTCTGCTGCTGAGCTGTCAGAGCACCGAGAGCTGAGGAGCGTCGTCGCTCTGGGTCATCACCTTTTCTACGAGGAGGCGCTGCAGATGGCCGAAGATGGCAAGATCTCCTGCAGGGTGCTGCGGACTGAGATGCTggagtgttttggggacattgATTTCCTGGCCAAGTTGCACTGTGTGCGTCAAGCATGTCAGCTCATTTTGTGCGATAGAACGACCCGGATGTTTCTGGCCGACACAGGAAAGAAAATACTGTCTTCCATTATCATTAAAGGACAGAAGAGCCCAAAGAGATTCGAGGAACTGTTTGAGGAGATGATCTCCTTCCTGGAGCACACGGAGCACTGGGAAAACACAGAGGTGGAGCTGGCCACACGAGGGGTGAAGCACTTGAACTTCTATGATATAGTGCTGGACTTCATCCTGATGGACTCATTCGAGGACCTGGAAAATCCACCGATCTCCATCCAGAACGTGATCAACAACCGCTGGCTCAACAGCTCCTTCAAGGAGACGGCGGTGGCATCAAGCTGTTGGTCAGTGATGAAGCAGAAGAGACAGCACATGAAGGTGTCGGACGGCTTCATCGCACATTTCTACGCTGTGTGTGAACAGATCAGCCCCGTCCTGGCCTGGGGCTTCCTGGGGCCCAAGAGCTCCCTGCATGACTTCTGCTGCTTCTTCAAGGATCAGGTGCTGTACTTCCTAAAGGACATTTTTGACCTGGACAAAGTGCGTTACTCTTCTGTGGAGAGTCTAGCAGAGGACATGCTCCACCTGCTGCACCGGCGCTCTGAACTGTTGGTTGCCTACCTGGGAGCCGACTCCCTGCGGCACGTCAACGGCTGCAGTTCCCCGCAGGTGCAGCTGGTGCCCAGCGCCCTGCTGGAGGCACAAGTGCAGTGAGAGACGGGGAGCTTCTGTCCATCCGTCCTGGGTCATCAATACTCACACATGGAACTCTCTGCATTTTCACTAGGGTGAGTTCACAGCAACTGTTGGACATGGCTTTATTTTCCACCCATCATGAACTTCAATGTAAAACACTTTGACAGAGGTCTGACATGCACATCTCCCATCATGCTTTGTGCTCTCATTGCTCTGTATCCCAGGATGAACTGTCTTGCCTTCACACTTAAATCATTAGTGTggcctctcctcccctcctcccttttCGCTGTGCCATAGCAGTGCACGTTCGATTTAAAATATCAGCAATATTTGTAATTTAAACTTGCTGCGAGACATTTTGCGTCATCTTGCAGTAGATATTCCGCTGTGTAAAATGAAGGCATTTGCTGTTGAGAGCAATTAGTCTAAagaaaaagggtattttacagtatttattttactATACAGTTAAATGATGCAGGATTTATATTTTAGAAGTTATAGTTGTGCCTGTATTTATCAATGCATTTGTGATAAGCTTCAAACATACAGTAGTATGAATACCAATGTTGAATAATAAACTATCAGATTTAGATGTATTTCCATATCAGCGATGCAAAACtattaaatgtactttgtttttgttacaaGCACGTGATGCGCAGGGACATCGCTGAACAAGGGTCTCCTTACGTTAGATACTAGGCACCAGAACTCAAACCTTTGTGCAATATTTATATGAAGCTTATCTCACGAAGCCTACAAGGCCCTTAAACCCATCATACAGTCAACTAtaggaaataaaaatatacagCACTAGTACATAATCCTGCAGCTCAAGACGGGCTAACCCGCAAGAAGCCTTACTATTAATGCACATATTTAAGCCTCGTCTTCAACACTGAATGTCAGTCTTAAAGTTACAATATATTATCATTTGCTGTGCTCAGTCACTGCCATGTACAGACCACGCACAACGTGAAAGCTTTGAGCAGCCGTTACTGCAGGAATGTACCTgtgttaatatttaaaaaatgcttGATACATGAAATTATGAAAGTTGTTGGTTGCAGACCTAGTTTCCATGCCTAACAGTGGTGACAGAAGCAcattaaaaaactaatttaatttGCATAAAGTCAAGACTGCTAAAGCCTCATTCACTAATATTCTTTGAACAGGAGTTCCTCCCCATTTCTTTAATTGTAATTTCATTATAAAAGATCTTTTAAGAGCCAGTAGGAACCATGTAACAAGTTTCAATGTACATTGACCGTGAGTTGTTCTCAGAGACTGTAAAAAGATGGAACTGATTTTCAACCCAGGGAAAAACATTTTACACTTGTGGGTTCACCTCATTTGTGCATAAATTAAGTAAATAAAGACTGATGagaatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155185 lncRNA upstream 156968 15921061 ~ 15921519 (+) False st6galnac5a
TU155183 lncRNA upstream 230195 15843154 ~ 15848292 (+) True G115055
TU155129 lncRNA upstream 235393 15842701 ~ 15843094 (+) False st6galnac3
XR_005640758.1 lncRNA upstream 319379 15746177 ~ 15759108 (+) True LOC120568726
TU155115 lncRNA upstream 401144 15677093 ~ 15677343 (+) True G114998
TU155232 lncRNA downstream 72 16094010 ~ 16097398 (+) True G115095
XR_005640737.1 lncRNA downstream 9780 16103718 ~ 16107792 (+) True LOC120568625
TU155243 lncRNA downstream 42227 16136165 ~ 16138828 (+) True G115103
TU155268 lncRNA downstream 115972 16209910 ~ 16216108 (+) True LOC120568989
XR_005640815.1 lncRNA downstream 119056 16212994 ~ 16216365 (+) False LOC120568989
XM_039815029.1 mRNA upstream 46647 15956359 ~ 16031840 (+) False ak5
XM_039815028.1 mRNA upstream 46647 15956363 ~ 16031840 (+) True ak5
XM_039815027.1 mRNA upstream 156956 15865586 ~ 15921531 (+) True st6galnac5a
XM_039816409.1 mRNA upstream 235400 15764683 ~ 15843087 (+) True st6galnac3
XM_039816612.1 mRNA upstream 333259 15737192 ~ 15745228 (+) True rabggtb
XM_039816246.1 mRNA downstream 19302 16113240 ~ 16118518 (+) True dnajb4
XM_039816247.1 mRNA downstream 25630 16119568 ~ 16136858 (+) True gipc2
XM_039816822.1 mRNA downstream 50169 16144107 ~ 16148770 (+) True LOC120569020
XM_039815022.1 mRNA downstream 57267 16151205 ~ 16180854 (+) True zfyve9a
XM_039815023.1 mRNA downstream 57267 16151205 ~ 16180854 (+) False zfyve9a
TU155130 other upstream 277994 15764698 ~ 15800493 (+) False st6galnac3
XR_005640847.1 other upstream 354690 15723729 ~ 15723797 (+) True LOC120569145
XR_005640846.1 other upstream 355284 15723135 ~ 15723203 (+) True LOC120569144
XR_005640848.1 other upstream 355914 15722507 ~ 15722573 (+) True LOC120569146
XR_005640849.1 other upstream 356239 15722139 ~ 15722248 (+) True LOC120569147
TU155276 other downstream 132369 16226307 ~ 16228522 (+) False LOC120568164
XR_005640725.1 other downstream 345087 16439025 ~ 16526429 (+) False LOC120568419
XR_005640724.1 other downstream 345087 16439025 ~ 16526428 (+) False LOC120568419
TU155758 other downstream 1313553 17407491 ~ 17440463 (+) False LOC120568596
TU155940 other downstream 1933342 18027280 ~ 18029895 (+) True LOC120567767

Expression Profile