RNA id: XM_039816253.1


Basic Information

Item Value
RNA id XM_039816253.1
length 2424
RNA type mRNA
GC content 0.45
exon number 17
gene id frrs1a
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 39486130 ~ 39522532 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGACCATACAGTCTAGATTACTGGGAAAATGATATTGCACTCACATGTCACGCTGGAGATTTTTCCTTCTACTCCAGCAGGCTTCCGAGTGACTTTGTGGACGTGTAGCAGCTGATTTATCTTGGAGATGTCTCCTGTGGGCTTGTATTGCCTTCTCTTTATCTCTGTCTTGGTGTGTTACTGGGTGCCAGCAGGCTGCTATGCCAACGGCAAGGTCACCAAAGTCTGTGGCAGCATGGAACCCCACCATAGTGTCCCCGGTCAAACCGCTCACAGCCCCTACAGCCTAGAAACCAACAGCATTAAGTTCAGTCCCGGAGATCAGATCAAAGTCACCCTTTTTGGAACATCGTATTTTGAGGGCTTTCTACTTCAGGCCAGAGATGCAGCCAATAAGAGCTTGGTATCCACAGTTGGCACCTTTACCCTGACCAATCTGAACAAGACACAGCTGCTCACCTGTAATAAGCACCAGggttCAGCAGTGAGCCATACGAGTGatgccagacagacagaggttgTTGTCATCTGGAATGCTCCTACATATGCTCCCAGACAGGTTCAGTTTTTTGTGACTGTAGTGAAACACTACAATCTATTTTGGGTGAAGCTGCCTGGGCCAGTCATCTCTCAGGATGGTGTTACTCCCCACCCACCTCAGTGGGACACTACGCCTCCTCCAGTACAACCTACAACCACAGCCTCCATCCTGCCTGGGCTTTTTACCTCTGAGGGATGTGGCCAGTCAAAATCTTGCCTGCTCGATCCTCCAGGCTGTGATCCAAAAGATCCTCATTGTTTCTTCCTGTCCATGACTACAGAGGGACCAGACAAAACGTCTATGATATTTGAGCTGAGTGGCCCAGCAGAGGGATACATTGCCTTTGCACTGTCCTGGGACAAATGGATGGGTAATGAcgatgtgtatatgtgtgtaaaaGATGGGGATAGAGTATTGGTGAGTGCTGCCTTCGTCAGTGGACGGACACACCCTGAGGACCAGTCTGAGtctgtcctctcctcagtGTCATGGCGGCTGGCAGACGGATATATTCAGTGCAGGTTAAGTAGACCAGTCAAACTGACTAATCAGAAAAGAGCCCTCTATGATCTGGACAAAGACTACTTTTTGTTTCTAGCCAACGGACATGCTCAGTACGGTAAAGTGTGGAAACATAGTCAGCAGCCATTAATCTCCAGCCACAGAAAACATATCACTGGACCACCAGAGATCCTCAGAGGCTCCCGGGCACCCATCATTATGAAAATGCATGGTGTACTAATGTTGTTAGCCTGGATGCTAACAGGAAGTGTTGGTACCTTCATTGCCAGCTTTTACAAACCTGATTGGCCAAATCAAACTGTCTTCGGCCAGAAAATCTGGTTCCAGgTTCATAGAGGCCTAATGATTCTAACTGTGACTCTGACTGGTGTAGCCTTCTGCCTCCCATATTTCTACAGGAAAGGTTGGAGCAAGcATGCAGGTGTCCATCCATACCTCGGTTGTTGTGTTCTAACATTATCTCTGACTCAACCAGTGATGGCTGCGATCAGACCATCATCTGACTCACACAGTAGATATATCTTTAACTGGGGCCACTGGGGAGTTGGATCTGTGACTGAGATCATAGCAGTGGCAGCCATGTTCCTGGGGATGCGTCAATCATCACTGCTCCTCCCCCAGCCATGGGCAACACATGTTCTGATTGGCTATGTGACATGGCTGACCTTATTCAGGTTCCTCCTCCTGATGCACAGGCACATTTACatcaaaaaatCCTTGGGACCAGATGATAAACAAGCCATCCTCTCTGACCCATCAGAACATGGTTGCTGGGGATCCTTCATAAAGTCTCTCATATTGGCTGCCTTGGCTCTTGGAAACTCTGGCCTATTAATGGCCTTGCTGTCTTCTATTGCTGAAATTTGACATGTTTTGGAAAAGATACCCAAATACCATTTTAAAAGGTGACTTTTTTGTTGGAATACTTAGCCTGATATCAGAAGTAACGAGGACCTTACCTTTAGTAttcaacaaaacacacattcattttattttaaccaaatcTATGCttttttgtgtatctgtgtagtTACATGTTTACTTCATTCCTAAACAACTCTAATTAAAAGTTCATATTTTACAATACAATTTTGAGTAGcattattaatgtttaatagtaGCTCGTaggaaattattaaataattcattaagtaaagaaagagagaagcatTGAAAATGTAGGTGGGACAATCATAATGGGGGGGTCTAGTGGTCCTCCTCCAGAAAATCTTTAAAAGAGCAGATGTCATTTCCTTTATGCTGGTGCCTTTTAACAGTcggtttaatattttttatctgGCTGACTAgcatgaaaataaatgtaatttcacCCAGATGAAGTGGTCTGCCATTTGATGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163050 lncRNA upstream 79732 39401395 ~ 39406398 (+) True G121185
TU162909 lncRNA upstream 625399 38856308 ~ 38860731 (+) True G121063
TU162896 lncRNA upstream 803878 38681710 ~ 38682252 (+) True G121053
TU162884 lncRNA upstream 936092 38549670 ~ 38550038 (+) True G121043
TU162882 lncRNA upstream 937504 38548426 ~ 38548626 (+) True G121041
XM_039814943.1 mRNA upstream 643059 38819047 ~ 38843071 (+) True pitrm1
XM_039816328.1 mRNA upstream 857720 38620336 ~ 38628410 (+) True LOC120568674
XM_039814686.1 mRNA upstream 1382420 38102577 ~ 38103710 (+) True LOC120567717
XM_039816922.1 mRNA upstream 1387884 38039081 ~ 38098246 (+) True LOC120569077
TU163034 other upstream 93354 39391972 ~ 39392776 (+) True G121171
TU162901 other upstream 730199 38755684 ~ 38755931 (+) True G121058
unassigned_transcript_597 other upstream 1289008 38197041 ~ 38197122 (+) True trnas-cga_7
TU162816 other upstream 1467092 38011877 ~ 38019038 (+) False LOC120568367
TU162730 other upstream 2180116 37302894 ~ 37306014 (+) True G120914

Expression Profile