Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039816257.1 |
| length | 1058 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 4 |
| gene id | cldn1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053122.1 |
| NCBI id | CM020919.1 |
| chromosome length | 39550354 |
| location | 15616397 ~ 15620659 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| id | description |
|---|---|
| K06087 | CLDN; claudin |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU154969 | lncRNA | downstream | 208770 | 15407377 ~ 15407627 (-) | True | G114883 |
| XR_005640790.1 | lncRNA | downstream | 223138 | 15387478 ~ 15393259 (-) | True | LOC120568803 |
| TU154900 | lncRNA | downstream | 350173 | 15264520 ~ 15266224 (-) | True | G114836 |
| TU154790 | lncRNA | downstream | 534417 | 15076141 ~ 15081980 (-) | True | G114752 |
| TU154756 | lncRNA | downstream | 613352 | 15001144 ~ 15003045 (-) | True | G114733 |
| TU155136 | lncRNA | upstream | 100360 | 15721019 ~ 15727229 (-) | True | G115017 |
| TU155169 | lncRNA | upstream | 114395 | 15735054 ~ 15735281 (-) | True | G115041 |
| TU155170 | lncRNA | upstream | 114821 | 15735480 ~ 15735895 (-) | True | G115042 |
| TU155171 | lncRNA | upstream | 115870 | 15736529 ~ 15736827 (-) | True | G115043 |
| TU155176 | lncRNA | upstream | 121165 | 15741824 ~ 15745228 (-) | True | G115048 |
| XM_039815271.1 | mRNA | downstream | 28513 | 15581618 ~ 15587884 (-) | False | bcl6ab |
| XM_039815272.1 | mRNA | downstream | 28690 | 15580776 ~ 15587707 (-) | True | bcl6ab |
| XM_039815273.1 | mRNA | downstream | 43257 | 15568830 ~ 15573140 (-) | True | fam78ba |
| XM_039816860.1 | mRNA | downstream | 62428 | 15549860 ~ 15553969 (-) | True | imp3 |
| XM_039816221.1 | mRNA | downstream | 69040 | 15537896 ~ 15547357 (-) | False | zgc:55943 |
| XM_039815030.1 | mRNA | upstream | 303043 | 15923702 ~ 15954239 (-) | True | pigk |
| XM_039815031.1 | mRNA | upstream | 325051 | 15945710 ~ 15954239 (-) | False | pigk |
| XM_039815825.1 | mRNA | upstream | 412623 | 16033282 ~ 16054068 (-) | False | zzz3 |
| XM_039815826.1 | mRNA | upstream | 412623 | 16033282 ~ 16053700 (-) | True | zzz3 |
| XM_039816384.1 | mRNA | upstream | 433600 | 16054259 ~ 16077214 (-) | False | usp33 |
| XR_005640845.1 | other | downstream | 203338 | 15412986 ~ 15413059 (-) | True | LOC120569143 |
| XR_005640844.1 | other | downstream | 203930 | 15412393 ~ 15412467 (-) | True | LOC120569142 |
| XR_005640843.1 | other | downstream | 204557 | 15411663 ~ 15411840 (-) | True | LOC120569141 |
| XR_005640842.1 | other | downstream | 205050 | 15411162 ~ 15411347 (-) | True | LOC120569139 |
| XR_005640597.1 | other | downstream | 311787 | 15290186 ~ 15304610 (-) | False | mfsd8l2 |
| TU155326 | other | upstream | 523501 | 16144160 ~ 16148121 (-) | True | G115164 |
| XR_005640638.1 | other | upstream | 561995 | 16182654 ~ 16201698 (-) | True | cc2d1b |
| XR_005640639.1 | other | upstream | 561995 | 16182654 ~ 16201257 (-) | False | cc2d1b |
| XR_005640637.1 | other | upstream | 561995 | 16182654 ~ 16201257 (-) | False | cc2d1b |
| TU155443 | other | upstream | 710294 | 16330953 ~ 16335932 (-) | True | LOC120568735 |
