RNA id: XM_039816258.1


Basic Information

Item Value
RNA id XM_039816258.1
length 2285
RNA type mRNA
GC content 0.43
exon number 2
gene id zgc:153913
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15622054 ~ 15624462 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACAGACTTGTGCTGAAACTAACAAAAATGCTTTCTATTCTACATGTTGCAGCCTATATTATAGCAACCAATAAAAGCCAACTATTTTCTGCACTGTGAGCTCATTTGCTGAATTCAAGAATTGTAAGCAAATGAAACCGTGGCAGGAACTGGCCGCTGACCAAAGGTTTTTGTCTTGCCTAATTCAGACTTGTTGTCGTTTGCACTGTGTGTTAGCTGGCTTGTAGATCCACAGGGAAATTTGTTTCAATGCTACGGGATCCCTGTAACACAGAGTGAAAAATGGACAAAGAATCTGGCCTGATTCTATTCCTGGTGCTTCTTCTCTGTCACAAAGgcaacacacagtcacacagctCTTGTCCATACACTTGCCAGTGTTTCACTTCAGTCCAGATACTGTGTGCTGATGAACGGATGGCATCTTTACCCATGAACACGTCCAGGCAGGTCAAGGACTTTATTGTAATTCAATCAGCTTTAGCATACCTGTTCCCCCGCACTTTAGAGGAGAGCCCCCAACTGGCCAAGCTTATCTTCCTAAATAATGCACTGCGAAGTGTTAACTCTCAGGCTTTTGAGCATCTGACTGAGCTGCAGGAGTTGGAAATCAGTGGGAACCCCTGGCTGGAACATTTATATTTGGGGACTTTTTCAAAGCAGGGAAACTTGACTAAACTACTGCTTAACTTCAACAAGTTCAAGACCGTGCTTCCTGGCATGTTTGATTCTCTCAAAAAGCTTGAAACACTGCAGATGAAGGGCAATATCATATCAGATCTGCCCCCATTTCTTCTGCTAAACCTCCGCAATCTGCGTGTCCTGGATTTGTCCCAAAATAAGCTCGAAGACGTAAAAAGGGAAACTTTTTCTGGTCCGATGAAACTGGAGATCCTGAAAATTAACAACAACCTCATCAGCAATCTTACATCTGACACGTTCCACAATATTTCTCAGCTGATAGAACTTCACTTGGAGGGGAATAAGATATCAGAACTTGTTGACAATATCTTCTTTGTGTTAACCGAACTGAAGGTGCTGAACCTCCGTGGAAACCTTCTCACAACCTTCAGTGATAACGTGTTTGGATTCGAGGCCTCAAATTTGAAGGAGCTGAACCTAAAGGGAAACAGATTGACTGAGCTGTCCTCTCTAAGCAGTTTGACGTCTCTTACCGACCTAATCTTGTGCTCTAACCAGCTCTCCGACCTTCCTGAGGACCTTTTTAGAAATGTTACAGCCCTGGAGAATGTGGACCTGTCTGAAAACCAGCTCACCCTGCTGCCCGCAATGATCTTCAATGATCTATTCAGAATCAAGGCCATCCACCTACAGAAGAACAACCTGAGCAAGGTGGACACCAATCTGTTTGAGGACCAGGTGCTCATTCAGCAGCTCTACCTGTCTGACAACGAGCTGGAAACTCTCCCACTGGGCCTTTTAGACCCTTTTGTCTTCCAGCACACAGTCAGACTGCACGGGAACCCCTGGAAATGTGACTGCCACATGTTGTACCTGCATGACTGGGTGTTGAGAAACAGCCAAGACGTAGAGATGGTTGAAAGCATGCTCTGCGCGAGCCCCAGCTTTTTGAGAAGACGGCCAGTCGTCTCCATCGACAAGGAACAGCTAGTGTGTCAGGTGTCTAAAGATGACACGCCTGATCTCAGCAGCTGCAGCCTACAATTGTCAAATGACACTGTGATCATCAATTGTAAAGTGGATAAATGCTCTCCACTCACTGTGAAGGTACAGTTTCAGGAGGATGACGACAACATTACGGAgcatgttttgaaaaatgagcCTCAATGTAGGAATGAGACAATGATCGAGATCCCTGTTCAGTAGTTTTTTCTCTTAATCAGACTTTGTTCTCTGTGCAAATACATTCTCTACATTTGGTCTTTCTTCATACAAAGAGAGTCATATTATATGTTCCGACTGTCAAAGTCAATACTGTAAACAAACCTCGAACTCAGCTGCTGATAACCAGCAAACATGCATGCTGCTGAATGATAAGAGGGGTGGATGAACCCTTTTCTTGTAAAGTTCAAAGTTCACCCCATTACTTTTTAAGATCACTGCTAAAAGGATCAGTGAGTAGCATGTTAATTATCTGTTTACATGTTGGTTCTCCAGTAGATGCTTCTGGCTCCCTTGTTTCTGTACACTGTTTGAATATGTCCTTTTATGGCATATCATgttttttgcagttttaaagAAGTCTTGCAACAGCTGCCAGTGTAAAATGTCAATACAATGTATTATTTGCTTCTTCAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155054 lncRNA upstream 53563 15566394 ~ 15568494 (+) False slc35a3b
TU155048 lncRNA upstream 72137 15549129 ~ 15549920 (+) True G114944
TU155046 lncRNA upstream 72137 15549306 ~ 15549920 (+) False G114944
TU155002 lncRNA upstream 166682 15444478 ~ 15455375 (+) True G114909
TU154995 lncRNA upstream 184304 15436104 ~ 15437753 (+) True G114905
TU155105 lncRNA downstream 640 15625102 ~ 15625323 (+) True G114991
TU155115 lncRNA downstream 52631 15677093 ~ 15677343 (+) True G114998
XR_005640758.1 lncRNA downstream 121715 15746177 ~ 15759108 (+) True LOC120568726
TU155129 lncRNA downstream 218239 15842701 ~ 15843094 (+) False st6galnac3
TU155183 lncRNA downstream 218692 15843154 ~ 15848292 (+) True G115055
XM_039815274.1 mRNA upstream 42533 15573251 ~ 15579524 (+) True cmpk
XM_039814631.1 mRNA upstream 54188 15554471 ~ 15567869 (+) True slc35a3b
XM_039816217.1 mRNA upstream 73137 15546789 ~ 15548920 (+) True sec22ba
XM_039816218.1 mRNA upstream 85207 15534657 ~ 15536850 (+) True tsen15
XM_039815637.1 mRNA upstream 93615 15520782 ~ 15528442 (+) True zgc:153115
XM_039816261.1 mRNA downstream 5469 15629931 ~ 15674694 (+) True LOC120568632
XM_039816264.1 mRNA downstream 5469 15629931 ~ 15674694 (+) False LOC120568632
XM_039816262.1 mRNA downstream 5474 15629936 ~ 15674694 (+) False LOC120568632
XM_039816263.1 mRNA downstream 17188 15641650 ~ 15674694 (+) False LOC120568632
XM_039816943.1 mRNA downstream 53932 15678394 ~ 15690444 (+) True si:ch211-106k21.5
TU155036 other upstream 93288 15520799 ~ 15528769 (+) False zgc:153115
TU155017 other upstream 143713 15472743 ~ 15478344 (+) False asip2b
TU154847 other upstream 464858 15151796 ~ 15157199 (+) True G114789
TU154338 other upstream 1326064 14289537 ~ 14295993 (+) False LOC120568245
XR_005640849.1 other downstream 97677 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 98045 15722507 ~ 15722573 (+) True LOC120569146
XR_005640846.1 other downstream 98673 15723135 ~ 15723203 (+) True LOC120569144
XR_005640847.1 other downstream 99267 15723729 ~ 15723797 (+) True LOC120569145
TU155130 other downstream 140236 15764698 ~ 15800493 (+) False st6galnac3

Expression Profile