RNA id: XM_039816264.1


Basic Information

Item Value
RNA id XM_039816264.1
length 3433
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC120568632
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15629931 ~ 15674694 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTCGCGGTGAAGAGAGCGCTGCTGTGACAGTGGGAAGCACAATCCGCGTACAGCCAGCGCGAGGCAAAGACCTACTAACAAGCTGTGAATAATGACTGGACGCAAAACGCGCAGCATGAGAGATGACTGACCACGCAGCAGCTTGGAACAAATGACAGAAGATTACACATGCTGGGGTTGAAATGAGAAGATGCCAGCAGCTGAAAATGAACCTAATTTGATTACATTTGAGAATTGAAAGATGCTGGAGATTGGTTTCCCTCCAATGGATTCCTAAAGTTGCTCCAAGAGAATCGGCCTCAACGATTTTACTGAAAGGATCTCTTGGTGGAAGTCAGCGAGCGGGGGGCCAGGATGTGGCCCCCTGACCTCGGGCCTCCAGACGTCCAGCTGACTCTTCCTGGTTTTGGAAGTGTGTTTGAGGATGCGGAGGACCTTCAGGCGCCACCGTCTTCTGGTGGCTTCTGTAAGACCTCGATACATTCAGGTGGTCAGGGTGTGTGCTGTCTTCCAAGgtcttccctgtccctgtccTCGCTGGGCCGGGACCTCACCTCCCTGCTCAGCTGTAAGACCGCTGGATCCCACATAGAAAAGCCTATGGAGGACTTTGCCACCACAGCGCACACAGATCCTAAAAACAACACCCAAAGGTATAGCTGTTACCCCCAGCCCTCCCTCCCTTTATCCTATGTGCTCACTAGCTGTGCCACTTCGCCCCCTTTTGGCTCGCcaccctcctctctttcctcttcctcctcttcatcagctTCATTTTTTACCTCTTCCTTGCCTCTTTCTGATGCACCTGGTGGCAACAAGACTCCTAATCTACAACGAAAGATACAGGAGGAGTATCGCTCAATAAAACAAGAGCCTGCAGATGATTTCTCGCCATGTAAGAGGGAACCGTTTCAAGTTAACAACCAGCAAGGGGAGCTGTTTTATGTGGGCCAGCCCCTCCAAGGTCAGGACAGCACCTCACTTCATTTCCCAAGGCTTAATGGACCCATAGGCCACAACCCCACAGTGGACCAACAGGACCAGCCATGCCACTGGATCGACTGTAGTGCCACTTACAGCAGTCAGGAGGAGCTGGTGAGGCACATCGAGAAGGTGCACATCGACCAACGTAAAGGGGAAGAGTTTTCCTGTTTCTGGACCGGCTGTGTGCGACGCCACAAACCCTTCAACGCTCGCTACAAGCTGCTCATCCACATGAGGGTCCACTCTGGAGAAAAACCCAATAAATGCATGTTTGAGGGCTGCTCCAAGGCGTTTTCACGTCTAGAGAACCTGAAGATCCACCTGAGGagccacacaggagagaaaccgtaCATCTGCCAGCATCCCGGCTGCCTCAAGGCCTTCAGCAACTCCAGTGACCGGGCCAAACACCAGCGCACACATCTGGACACGAAGCCGTACGCCTGTCAGATCCCAGGATGCACCAAACGTTACACCGATCCCAGCTCGCTACGAAAGCACGTCAAAGCTCATTCAGCCAAAGGCCTTCAGGAGAGGGAGGTCAAGGTTCAGGTGCACACAATGCTGGAATCTGACATATTGAGCGATTGTCTGGCAAGGAAGCATCTCCACCAAGGAAACGGCTCACCTTTACCCAGCTTAGATGACTTCACAGgtGTGTACTCAAACAGCAGCTCTGTCTACAATAGGCCAAATTCTGAGTTTCTCCCTCCATCAGCAGACACCTGCTCCAGGTATCGAAGCTTGGAGGGAAACGCCAACTGCCCAATATCTTCAATTACAGGCAAAGGGAGCATTCGAGAGGGGAACAGACCCACATCGTTGTTCATGTCCGCTGACGTCAGCCCCGTGAGCTCCTCGTCAGACAGAGGGGACGTCCAGCTGCAGGGTTACCACAAAACCTACAACCACCAACAAGTATTCTCCCAGCAGCAAGGATGTCTGTACGGAGAAGGAAAGGTTGTTCAACCGGTCAGCGAAGAAGGTTTCGAACCTGCCAGTTACTTCACAACCTCCTGCACGTCACACTCTACAGGGTTCGACTTGTTGCAGGACCTGCAGGGCCAGGCCGGGGCCGGCTACTCCATGTCTCCCTGCTCAGACGACAGCTTCCTTTTCCAGGCGGGAGGCGTCGACCGCTGCCTCAACCAGATCTACTCCATCTACCTGGACTCATGATGGGCCGCCCAGAACCAAACAAAACTGAATCAGTAATCACTTTGTTTTCCTGAGGACAAAATGCAGCTTGTACAATGTGTGGCGGCAGACAATCACAACAACAATATACTGTTTATTCAAGGCTGAAGTTGAATTGTTCTTCTTGACAGAAAATATGTCAGTGGGAGTTTTAATGGTACAAACAAGATGTAGAATTGACTAGAGGCAGAGCTGCGGGCAAAGAGGAAATCTGTTCGGATTATAAATGTGAATAGcgagggagttttttttttattcagagatGGACACAGCATTTGTGAGCTGGATAGAATGAGCTATGAGCTTTTATTTGCTGGTTTGATCTGTTGGAAAGCCATGTAGCCAGCTCTCTGGCTCTAGTGAGGTTAAATTCTGCCTCCAGGAAATGTCAAAACAACAAGAGAAGTTGGTAAACCATGCAAAGAGGCTAAAACTGGGCTGACGTGGAATGGTATCATGGCCAGAAAGATGATAAGTGTATTTCCCCaaacaggggcgtagcacaaaattctgggccctgtagaaaggcattttctatgggcccctccccgcatccacagctaatcattctagcatctttttgggccctcctcacatgagggccctgggtacttagtcccctttttcccccccagtccgacgcccctgtcCCCAAAAATCAAACTATTGAAGGTTGTAGCATGTAACCAAAGTGTCACTGAGAAACCTCCAACTGCTTGTTAATTTACATTTTGCTGCAAAGAAGGGAACTGCAGGAGAACCTGTAGCAATGCTGCCACCCAGTGTCTGAATGACTGTATATAAATGTACTTTACCGTCTGTGGTACAGATCAGTGTGGATGACTCCTGGGACTTAAAactgacacacaaaaacatcaaaaaatgcACTAAAATGTATCGTCTATGATTTGTCTGTCATAGACTGAGTGGTGCCAACAAATCGGTTCAATGTATGTAATCTAACAACGAACAAGACAATATCGTAATctcctttttttatattgtctCTTCTGTTCCTTCTGTTTGTTGTATCGGTGTTATATTCAGTGAGAGGGAGGTGTGCATTGTTTACAATAAGTTCTCTGCACTCTACTACGCTGTCTCATCACAGAGAAAATGACCAACCAAATGTTTACACTGATTTTGTAGCAATTCAGAGATTTTCTTATTCGTGTTATTGAACAGTGtatatagactgtataaaaatgCACCTGTCTTTtatatctaaataaataaattggtttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155105 lncRNA upstream 4608 15625102 ~ 15625323 (+) True G114991
TU155054 lncRNA upstream 61437 15566394 ~ 15568494 (+) False slc35a3b
TU155048 lncRNA upstream 80011 15549129 ~ 15549920 (+) True G114944
TU155046 lncRNA upstream 80011 15549306 ~ 15549920 (+) False G114944
TU155002 lncRNA upstream 174556 15444478 ~ 15455375 (+) True G114909
TU155115 lncRNA downstream 2399 15677093 ~ 15677343 (+) True G114998
XR_005640758.1 lncRNA downstream 71483 15746177 ~ 15759108 (+) True LOC120568726
TU155129 lncRNA downstream 168007 15842701 ~ 15843094 (+) False st6galnac3
TU155183 lncRNA downstream 168460 15843154 ~ 15848292 (+) True G115055
TU155185 lncRNA downstream 246367 15921061 ~ 15921519 (+) False st6galnac5a
XM_039816260.1 mRNA upstream 5469 15622054 ~ 15624462 (+) True zgc:153913
XM_039816258.1 mRNA upstream 5469 15622057 ~ 15624462 (+) False zgc:153913
XM_039815274.1 mRNA upstream 50407 15573251 ~ 15579524 (+) True cmpk
XM_039814631.1 mRNA upstream 62062 15554471 ~ 15567869 (+) True slc35a3b
XM_039816217.1 mRNA upstream 81011 15546789 ~ 15548920 (+) True sec22ba
XM_039816943.1 mRNA downstream 3700 15678394 ~ 15690444 (+) True si:ch211-106k21.5
XM_039816942.1 mRNA downstream 3700 15678394 ~ 15690444 (+) False si:ch211-106k21.5
XM_039814841.1 mRNA downstream 17961 15692655 ~ 15697180 (+) True best4
XM_039814704.1 mRNA downstream 23572 15698266 ~ 15708735 (+) True LOC120567729
XM_039814705.1 mRNA downstream 34778 15709472 ~ 15720176 (+) True LOC120567730
TU155036 other upstream 101162 15520799 ~ 15528769 (+) False zgc:153115
TU155017 other upstream 151587 15472743 ~ 15478344 (+) False asip2b
TU154847 other upstream 472732 15151796 ~ 15157199 (+) True G114789
TU154338 other upstream 1333938 14289537 ~ 14295993 (+) False LOC120568245
XR_005640849.1 other downstream 47445 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 47813 15722507 ~ 15722573 (+) True LOC120569146
XR_005640846.1 other downstream 48441 15723135 ~ 15723203 (+) True LOC120569144
XR_005640847.1 other downstream 49035 15723729 ~ 15723797 (+) True LOC120569145
TU155130 other downstream 90004 15764698 ~ 15800493 (+) False st6galnac3

Expression Profile