RNA id: XM_039816271.1


Basic Information

Item Value
RNA id XM_039816271.1
length 4793
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC120568635
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17064933 ~ 17095824 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCAGGGCCAGGGAGGTGCATGGCAGGGAGGCTTGCACCTCGCCGTCTCCCTCTTTTTGAGTCTCCCTGGATTGTGGGGTTGCTTCTCCATCCCAGGATGCCATGACCTTTTTATGCTTCGTCATAGGTTGGAAAGTTACAATTACCCAACCACCACTGACATGGATTGAATTTGCTCTCATGAAGAGAAAATGGAAGCACAAAAGCTAGAAAGCAGACTGGAAACTGGAACTgtttagagcttttttttttttcctggtccCAGTTACTAGATAATGATGCGAGGTAACGAAGGAAAAAAGGTAAGTGAGCCTTAACTTCAAGGAAGTGAACccagaaaacacaaaagctaTATTTGGCGAGATACACACATCCATTGATACTTTGGCATTCACATTCGGCAATGTAGTTTCTGACTTCCTTATGGGAGATGTGGACAGCGGCCCAGGGTTGGGGATCCCCCAGACCAGGAGGAGCAGGTCTTTTGACAATGTCTCTGTGGTTCCTGAGGAATATGTTTCAGAGAAAAGTGACCCTGTGGGCCCAGAGGTGGCGTTGGCACGGGAGGAAGAAGTTGACTTGACCCTGCTGAAGAATGAAAGCGGGGTGGAGTCTGCTCTGCTCTACGCTAAGACCTGGTCCAAGTATATTAAAGACCTTCTGGCCTGGATGGATAAACGACTGGCTATGGATATTGAGTATGCCAAAAGTTATGCCAAAATGGCGGAGTCTGCTAAGACACTGGCCAGTCAACAGGACTACATGCCATTCAGTGATATCTACGTTTCCACATTCAAGAACGACATTGAATACAAACAGCTATTTATTCAAACTGCACTGGCTCTTCAGACCAATAAATTCATACAGCCTCTTCTGGCCCGTAAAAATGAACTTGACAAGTTGAGGAAAGACATCAAGGAGCAGTGGCAGAGGGAGCAAAAGAAAATGCAAGAGGCGGATGCAACCTTGCGTAAGGCACGAGTGCTGAAGGCCCAGAAGAGAGAGGAGTACCAGAAAGCCCACTCATCTACCAACCGTTCCCAGGAGGAGCAGTCTAATGCTGGCAACAAACAGctggagaagaagaggaagctGGAGGAGGAGGCTCTGCAGAAGGCGGAGGAGGCCCGGGACCAGTACCAGAGCTGTATGGCAGACGCAGGCATCAGGAGGATGGATCTGACCAACGCCAAGAGCACCATCCTCACACAGATCCGAGAGATGGTCTTCCAGTGTGACCTCACACTTAAAGCTGTGACCGTAAACTGGTTTCAGATGCAGCAGGCACAGACTGTATCGCTCCCTGCCCACTACCAGGCACTGAGTGAGAGTGCCAAGTTGTACGAGCCAGGTGAATGCTACGCTGAGTTCGTCCGGAACCTGCCCAAAAATCTGCCTAAAGAGCGTATGCACTTAGACTCCACCTCCTCTGACAATACCAGGTTTGTGTTCAACAAACGGTCAGTGGGCAGCACTCATTCCTCCCATGGCAACCTGTCGCAGACATCCATCACCTCTGGTGATGTGCTGAGCGGAGACGAAGCGGATAGTCCCCTACACCGggctgcaaagagcagcgagcCGAGGTCCAGCAGCAGTACGGACATACAAGCGCTGAGAAGCCAGGTCACGCTGAGAGCCTGGGCCTCCAGTAGTCAGGGGAGCCAGAGCGGGATGTGCAGTGACTCGGAGAGTGCGGGAGGCAGCAGCGAGTCGAGGTCCATGGACTCCCCCACCGCCAGTCCAGgtgacTTCAAACGACGGCTGCCGAGGACTCCCTCCACTGGGACCATGTCTTCTGCCGATGACCTGGATGAGAGAGAGCCACCATCACCCTCAGACAATgGTCTGGCAGAGATGGTGACCGAGACAGCCAGCTCTCCGGGTCCCTTCCGAAATGCTCAGATGTCCAAAGCTGCTCAAACCCATAAACTGAGAAAACTACGAGCCCCATCTAAGTGCAGAGAGTGTGATAGTTTGGTGGTTTTCCATGGAGCTGAGTGTGAGGAGTGCTCCCTGGCCTGCCATAAGAAGTGTCTGGAGACGCTTGCTATCCAATGTGGCCATAAAAAGCTGCAAGGTAGACTACACCTGTTTGGTATCGACTTTACCCAAGCAGCAAAGAACAGCCCAGATGGTATCCCTTTCATCATCAAGAAATGCACATCTGAGATTGAGTGTCGAGCCCTTAACATCAAGGGGATTTATCGAGTGAATGGTGCCAAATCACGCGTCGAGAAGCTCTGTCAGGCGTTTGAAAACGGGAAGGACTTGGTTGAGCTTTCTGATCTTTCACCTCACGACATCAGCAATGTCCTTAAACTCTACCTGAGACAGTTACCAGAGCCATTGATCCTCTATCGATACTACAACGACATTATCGGCTTGGCCAAAGAGTGCCAAAGAGTAATTGCAGAGGAGGCTGATAAACCTCAGAGCACCCATGCAGGAGAGAAAGGTGGGACAAGTATCCAGCTCAACAGAGTCATTTTCAAGATCCGAGACCTTCTCCACCAGCTGCCTACTACCAACTACAGGACTCTGCGCTTCCTGATAGCCCACCTAAACAGAGTGACTgagcaggcagaggagaacAAGATGACTGCGAGTAACCTGGGCATTATCTTTGGCCCCACACTGGTCAAGCCACGTCAGACAGACGCTGAAGTGTCCCTGTCCTCGCTGGTTGACTACCCCTACCAGGCCCTTATGGTGGAGCTGCTGGTGCGACACTTCCAAGCGGTCTTTGATGCATCACTTCTGTCTGGCTCTGACATCACCACAACTGGCCAGGCGTCCCCCAGACTCACCCCTCAAGAGAAGGTGCAGCGGCTCAGCAGACACTCCACCTCCCTGATGGACATCAAAGAGGGAGCCAAAGTGTACAAAAGATACTCCTCAATAATCCCGTCCTCGCACAACGTGGACGAGGTTCAGGAGGTCCGGCCAGGAAGAGACGGGACAGAGATCTCAGCCCTGGACAGACTCAACGGGATGCTGACCTCTAGTGAAGGAGAAGTTCAGAGGTCAACCTTGGTGTTTGGCCGTCCCAGCACCACCATCCCCTCCACCGCTGCTGTGGCAACAAAGGTCCAGCTACGCAGCCAGCGCACCAGACATGTGTCTCGACCGATCAGCATGCCGCTTGAACGGCTGCCCACCCCCGCCCAGATTAGCCAGAGGAATAACTGTAACACTGCTGCTGATGTAAGCTCTGTTGAGCGGGACCCCGTGTCTGAAACTATACAGGAGATACCAGAGCCAGAAAAGGCTCGCCAAAGTAGCTCGTCAAGGGTTAGCACCTACTACATCACTCCTTTCATTGACACACAGTCAATGCAGAGGAGAACGTGGGACAGGAAGTACAAGCACTATGATGTTACACCTAGGACTGCTATGATTGTGGCCAACCTGCCATCCGCCAGCTCTGGAGTACAACCTGTGAAGGCAACGTTGCCTGTCACTGTAACCACTGCCTCTGTGGTCCCTACCACAAGTATTGTGAGCACCATCTTCTCCAACAACCCCTACACAGCGCCAGTCAAGCCTGGCTGGACTTCTAAAAGGGAAAATGACACAGATAATTCGCTTAGTAAGTCTAGCAGCTCTCCAAACCTTCCACTAACGCTCAGGGCACCGAGAACTCTGCAGCCTCCTCCTGGAACTTTCTACAAGCCCCCTGTTTCCATTAACAGCAGAGCTAGAACGCTTCCAAACTGGACTACAACTGTTAGCACCGTCACCACCACCACTGCCACCGCCACCACTACCCCCACCACCTCATCACACACCCCCACAGACCCTGCCCAGGTAGTTATCCAGTCCCCTGCCCTTACGAGCCCCCCACAGACATGGCTCCAGACACAGGACTCCACTGACAGCGCCATTGACCCCGGGGTCTCGACCTCAGCTACCCTTTCGCCCCCACAGTCCCCCCCCCCTAGCAGCCCTGACGACCTCAGCCCCAGTGAGACTAAACCCGTCTACCAAAGACTGCGACCTCGGCGGCTGCAGGAGCTTGAACACAGAGAGGCTCATTTTGTCTGACgccaaaaaaacatattatatctgtaaatattaatgtatCTGTGCCATAGTGTATACTGGGgggaaaacatttgtttttatcatAAATAATTgagagtgggggaaaaaaaaatgtaggcctgtaaaaaaataaaccatgaAAGTGTTATAAGTActaatatattgtattttacagTGATTGGTCTCTCAAGCATTCAAAACAAGCAAATACTACAAATATGATGCCAACATTGAATGTTCAGTGTCAtgcctttaaaaaacaaaatacacaaattgTCTATTTTTATGTCAAAGAATATTTGCCAACCACATCTGTCTGTAAAGAATTATAAATCTACAATGGACCTTTAAGTTCATgtacaatgttttatttgttatgaaattatattttattgtaaTCACACAATGCACTTAACGTAGGTTCAAATTCTAATGTTGCCTTTAATGTTCAAATTTGCTTAATTTTGTATCTTATTCCACAAGGAACTGATGGAAGTATTTTTAACATGAGGTTTTCAATTTTAAGAGTTCAACATTTTTACCTTAAAGTTTGTCCTTCGTTGCCTGTGATTGGTACATCTTGTCTCCGTATGTAAACCTTATGTATCTGTTTACgttttttatattcatttatACATACTGCATGTTTGTCAGTAATTTTGTTTCATCGCATAGTTGACTAtacagaaggaaaaaaagcatGTAACAGTGCTTTCTGcaaattaaaatgcattttaaacTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155573 lncRNA upstream 258467 16760435 ~ 16821676 (+) True G115350
TU155499 lncRNA upstream 467937 16610644 ~ 16612206 (+) False LOC120568363
TU155501 lncRNA upstream 467982 16610644 ~ 16612161 (+) False LOC120568363
TU155504 lncRNA upstream 471601 16606703 ~ 16608542 (+) True G115295
TU155419 lncRNA upstream 648488 16430161 ~ 16431655 (+) True G115223
TU155669 lncRNA downstream 61804 17157628 ~ 17158200 (+) True G115404
TU155707 lncRNA downstream 72749 17168573 ~ 17169818 (+) True G115437
TU155712 lncRNA downstream 87328 17183152 ~ 17186653 (+) True G115442
TU155715 lncRNA downstream 108839 17204663 ~ 17210211 (+) True G115445
TU155716 lncRNA downstream 122086 17217910 ~ 17224738 (+) True G115446
XM_039816400.1 mRNA upstream 19394 17047694 ~ 17060749 (+) True LOC120568716
XM_039814526.1 mRNA upstream 35081 17043061 ~ 17045062 (+) True LOC120567614
XM_039816774.1 mRNA upstream 41039 17032876 ~ 17039104 (+) True rheb
XM_039815517.1 mRNA upstream 400771 16651167 ~ 16679372 (+) True vapal
XM_039815516.1 mRNA upstream 431000 16640814 ~ 16649143 (+) True rab31
XM_039815706.1 mRNA downstream 1446 17097270 ~ 17139546 (+) True LOC120568298
XM_039816711.1 mRNA downstream 221289 17317113 ~ 17325659 (+) True amy2a
XM_039816209.1 mRNA downstream 310673 17406497 ~ 17483553 (+) True LOC120568596
XM_039816889.1 mRNA downstream 447846 17543670 ~ 17552930 (+) False dcaf8
XM_039816890.1 mRNA downstream 448144 17543968 ~ 17552930 (+) True dcaf8
XR_005640725.1 other upstream 553714 16439025 ~ 16526429 (+) False LOC120568419
XR_005640724.1 other upstream 553715 16439025 ~ 16526428 (+) False LOC120568419
TU155276 other upstream 851621 16226307 ~ 16228522 (+) False LOC120568164
TU155130 other upstream 1279650 15764698 ~ 15800493 (+) False st6galnac3
XR_005640847.1 other upstream 1356346 15723729 ~ 15723797 (+) True LOC120569145
TU155758 other downstream 311667 17407491 ~ 17440463 (+) False LOC120568596
TU155940 other downstream 931456 18027280 ~ 18029895 (+) True LOC120567767
TU156065 other downstream 1209325 18305149 ~ 18354344 (+) True G115729
TU156233 other downstream 1576738 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 1921234 19017058 ~ 19018726 (+) False LOC120568770

Expression Profile