RNA id: XM_039816275.1


Basic Information

Item Value
RNA id XM_039816275.1
length 3837
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC120568637
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27612075 ~ 27632981 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGCGGCGGCAGAGATGATCAGCACCGCTGGCTCTGAACCTGAACGTGTCTCCGCGTATATCGTTTGCCTAAACATACTACAGCGACAAACATACATTCGCGGAGTTATGTAGCCTAATTGTTGCAGTAAATATCGAAGAAGGTGAAATGACAGAATTTCTACGTTGTTTCGAAGCACACGCCGCCTCGTCTTGTTCTCACTGAGAGAGGATATAACGGCTTCGCGTCGTCGTCAGGAACCGTCCGGGTCCGGGAGGCGGAGATGGACGGGGGGACTGCGGAAACCGGGGATGACGGGAGGACGAGTGAGGAAGCGACCGCTGGCCTCTGTCTACAACTTGACCTGGGCGAAAACGATTCAGCCAAGAAGGCTCAGATAACAGAGATGCCGTCCCCATTCGGAGCAGGCCCAGCCCATGAGAAAAAGATCGGCCACAGAAGGGTAGATGCCTCCGGAGAGACAACCTACAAGAAGACCACCTCCTCTGCCTTGCAAGGGTCCATCCAGCTGGGTATCGGATACACTGTTGGCAACCTCAGCTCCAAGCCTGAGAGAGATGTGCTgatgcaggacttttacgtgGTGGAAAGCATCTTCTTCCCCCGGGAAGGCAGTAACCTCACTCCAGCCCACCACTACCCAGACTTTAGGTTTAAAACCTACGCCCCCGTGGCCTTCCGCTACTTCCGAGAGCTGTTTGGGATCCGACCAGATGACTACCTGTATTCTCTCTGTAATGAGCCACTGATCGAGTTGACAAATCCAGGAGCTAGTGGCTCCATATTCTATGTGACCTGCGATGACGAGTTCATCATCAAAACTGTCCAGCACAAAGAGGCAGAGTTTCTACAGAAACTCCTTCCTGGATACTACATGAACTTGAACCAGAACCCACGGACTTTGCTGCCAAAGTTTTTTGGCCTCTACTGCGTCCAGTGTGGGGGCAAGAACATCAGAGTTGTCGTGATGAACAATATTTTACCGCGCTCCGTACGCATGCACCTCAAGTTTGATCTGAAGGGCTCCACCTACAAGAGGCGCGCATCCAAGAAGGAACGAGAGAAGTCCAAACCCACTTTTAAAGACCTGGACTTTCTGAATGACCTCCCTGAAGGCCTCACTATGGACCACGACACATACAGCGCTCTGGTCAAAACTCTGCAGAGAGACTGTCTGGTTCTGGAAAGTTTTAAGATTATGgactacagtttgctgctcggGGTCCACAACAAGACCCAGGCACAGCGGGAGCACCAGTCTCAGGGCTCGCCTGCAGGAGGTGGGGATGAAAAGAGGCGCGCCGCTCAAAGAGCCTTGTATTCCACGGCCATGGAGTCTATACAGGGAGGCTCCACATGCAGGGACACACTGGACCATGATGACACTATGGGTGGTATTCCAGCTGTGGGTAGTAAAGGAGAGCGCCTCCTGCTGTTTATTGGAATCATTGACATCCTGCAGTCCTACAGAATGATCAAGAAACTGGAGCACTCTTGGAAGTCCCTCATCCATGACGGGGACACCGTGTCAGTTCACAGGCCTAGTTTCTATGCTGAGAGGTTCTACAAATTCTGCAGCACCATCGTCTTCAAGAAGAGCAGCTCATTGCGATCGTCTCCATCTAAGAGAGGACGAGGGGCTCTCATGTCCAAGTCCAGTGCTGGAACGGGCTCAGCTGGCCAGCGTCCCTCACTCACTGATGAGAAGCAGGAAAACCTGGACAACTTGGAGAACCTACGAGGAGCTCGCAGCTTCCCCATGTTTGAGGACAATGCGAGAGAGCCACCTTGCACTCCTCCTTCCTTTGAAGATGCTACGACAGCTTCTATCGCCACCACGCTCTCCTCGAACAACTCCTTACCCACCACCCCCTTCGATACACCGGAGCACCCACGCTACAGGAGACAAATGCTTTCTCCAAGTGTGACCAGGTCCCAGAGAGAGGTAGTTGAGGTTCATGGGGAAAAGCAGGACACCATTACAGTGGAGGTGGAGCTCAGTAAAATCCCACAGAGCACAGAGCTCACGGAGATGACAGAAAGCCCCTCTCCCGGCCATGTGTCACCTGATCGTCAGCCCCAAGCCATTACTTCACCCAGCCCCGCCTGTATTAGTCCATCCTCGGCATATTCCTCCTCcacccttcctccttcctttgtGACTTCCTCCCCCGCTGCCCAATCAGCTGACCAGTCGTCTTCCTCTCCTGCTTCATCCATCCGCCCATCCACCAAACCACTCACCTCCTCTGCCCCTTCTCACTCTCCCACTCTTTCTCTTCCAACCTCTTGTTCGGCTGCCCAATCCACGCTTCTCACTTCAGCTCCAAACATCTCCAGCCTCCCACCTGACTCGGCATTTACTCCCATCTGCCCCGCAACTTCTCACTCCTCCAGCCCTCCCTCCTCTCACAATCTGCCCTcgacccctccctcctcccagcCTCCGAGCCCCCAGGTGCCTCAGCAGGCGCCGCGTCCGTCGTGCAATCAGCTGTCTGTGTCCAGCAGCCACAACTCGTTGGATGGGGAGGTGCAGGTGTCTGACATCTACTTTCAGACTCAGGAGGATCGGGGCTGGGTGTACTCTCCTCTGCACTACGGCTCCGTGTCCAGAAGGGGCTCAGATGGGGAGAGTGAGACATAACTCCAAGTGGAAGCAGCAGTGACGGCTGGAGCCGGAAGCTGTCTCCCTATACAGACGCTGTGAGGTTTTAATAACAAAGCCACCAGGACACTATGAGAATGAATGCTGGCTGCCCAAGCTGCATGTGGGGAGCTTGCTTTGCCAACAGAGACGCTTCGCACGGCATTCAAGTATTTCAACAATACATTCACGCGTATACGTGCAGACGAACATACAACTATCAAAAACATTATgcaaaaaaattcataaaatcaTAATAGATCAATTCCTGGGCAGTCTGACTGACATCAGTCAGAGAAATAAAGTCCAATCCCGTGGTACAATCAGCTGAGTGGCACTGTGAATGGTGGCTGTTGAGGCAGGTGTTGTTGCAGCCCTGCTGCCGGCTCTGGATGCTTTTAGTGTTCCTGCTGCACTGTGCCAGCTCTGGCTATGCAATATGCTCATACGtgttatttatttctctttttgacTAACCTAGCATAATTACTTCAGAATTTATTGATGCATTTAATTTTTCACTAGGGGCATGTCAAGGccatatcattttattttagcaCTTTATCGATGTCCATGTGGCGGAAATGgtaaacattttgttatttttgtcatCAGTTATTGTTTGAAACACTCCAACACAGTTAATGGTttgtgcgctgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcgcacagtgttgtgttttccaGCAGTGTGGCGTGGCGGCGGTCCACTCAAGAAACTTGGCTCTGACAATGAATGGTTGTGTTTAAAATGCCTTATTGACGAACTCATTTTCATAACTGTTTTTGATATTTCCATCATGTAatcatttcaaaacaaaaatatatatatattaacatgAAGAGTATTTTATTGTGAGTAAATAACACATCTTTGAAGCAGAGAGCAACCATGCATTAACACCTTTTCAGGATTAAGAACcaagagataaagagagaagaaaggaaaaaggaaaaaaagatttaaaaaaaaaagaccttttGTAAATTGTAGATAAagtgtgtgtgcctgagcaCATGCATGTAAGTCTGTACGTGCCcttatttctctgtgtgtgcatgtgtctgcatgcatATTGATGTGTGATTGGGAGACATGTTTCCTGTCCTGCCTATTTGTCAAATCGTCAAAAAGGTGTAACTTCCATTTGTTGTTATAAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159690 lncRNA upstream 1750 27610098 ~ 27610325 (+) True G118488
TU159611 lncRNA upstream 212679 27399054 ~ 27399396 (+) False gpr35b
TU159604 lncRNA upstream 224119 27386896 ~ 27387956 (+) True G118420
TU159593 lncRNA upstream 245514 27363578 ~ 27366561 (+) True G118409
TU159464 lncRNA upstream 350720 27258374 ~ 27261355 (+) True G118306
TU159727 lncRNA downstream 56031 27689012 ~ 27690687 (+) True G118514
TU159731 lncRNA downstream 71189 27704170 ~ 27705071 (+) False LOC120568664
TU159760 lncRNA downstream 311270 27944251 ~ 28042190 (+) True G118537
TU159779 lncRNA downstream 403480 28036461 ~ 28037330 (+) True G118549
TU159804 lncRNA downstream 486286 28119267 ~ 28119624 (+) True G118564
XM_039816560.1 mRNA upstream 2383 27602000 ~ 27609692 (+) True LOC120568838
XM_039815340.1 mRNA upstream 169946 27434113 ~ 27442129 (+) True abhd17aa
XM_039815328.1 mRNA upstream 213015 27394523 ~ 27399060 (+) True gpr35b
XM_039815152.1 mRNA upstream 283224 27318329 ~ 27328851 (+) True cactin
XM_039814722.1 mRNA upstream 320540 27286920 ~ 27291535 (+) True LOC120567742
XM_039814839.1 mRNA downstream 53183 27686164 ~ 27688056 (+) True LOC120567796
XM_039816318.1 mRNA downstream 71020 27704001 ~ 27705211 (+) True LOC120568664
XM_039815853.1 mRNA downstream 106011 27738992 ~ 27838118 (+) True epha4b
XM_039815854.1 mRNA downstream 106011 27738992 ~ 27838118 (+) False epha4b
XM_039814528.1 mRNA downstream 327921 27960902 ~ 28025246 (+) True dnah9l
TU159680 other upstream 2357 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 726045 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 842164 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 1012003 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 1194067 26416508 ~ 26418008 (+) True ccl20a.3
TU159791 other downstream 523992 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 2335432 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 2936414 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3538236 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 3565979 31198960 ~ 31200014 (+) False G119123

Expression Profile