RNA id: XM_039816285.1


Basic Information

Item Value
RNA id XM_039816285.1
length 1123
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC120568640
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 30482588 ~ 30524863 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGGATACATAAATACATCTCCCGGGTCTACATAAACAACGGTCGAGCCTCCCCCGGAAAGTAGCCCGAACACAGCCAGACAGACGCGCCGCAACGCCGCTAAACAGACACCACGTGGGAGCAAGCAGAGACAGACGGGCTGTTGAACTCACTCGCTCAGTAGGACCTCTGTCTTGATCCATCATGAATTTCTTCCTGGAAACGATCAAAGTCCTCCTGCTGTCCATCTGGTACAATGTGGAATCTTTCATCCACATCTTTGTGCCcacgaagaagaagaacatcGCTGGTGAGGTGGTGCTGATCACGGGGTCAGGTAGCGGGATCGGCCGCCTCATGGCTCAGGAGTTTGCGGCTCGTGGCACTGTGCTGGTGTTGTGGGATATTAACCAGGACGGGATGAAGGAAACTGCTAGACTGGCTAAGCAGAGCGGAGCCAGCAGAGTCCACTACTATCTGTGTGACTGCAGCGACAAGAACGAGGTTTACAGAGTGGCTGACCAGGTAAAGCGAGAGGTGGGTGACGTCAGCATTCTGGTCAACAATGCTGGGATCGTGACAGGAAAGAAGTTCATGGATGCCCCCGATTCCCTGATTGAGAAGACGGTGGAGGTCAACACCATGGCTCACTTCTGGACCTACAAGGCCTTCCTTCCTGCCATGATTGCCAACAATCACGGCCATCTTGTCAGCATTGCTAGTTCTGCTGGACTCATAGGAGTCAATGGATTGGCAGACTACTGTGCCAGTAAGTTTGCAGCAGTAGGTTTCGCAGAGTCTGTGGGTCTGGAGCTGCTGGCAACTGGGAAAGATGGTGTCAAGACCACCATTGTGTGCCCGTACTTCATCAACACTGGAATGTTCAATGGGTGTCAAACTAAGTGGCCAAGACTGCTGCCAATCCTGGATCCAGACTATGTAGCCAAGAAGATCATCAATGCTGTGCTCACAGACCAGGTCTTCCTGCTGATGCCCAAGAGCATGTACCTCATCACTGCTCTCAAGAAATCTGTTATGTAAAGTTTCTGGATCACAGGTCATAATCACTACCACTGCAACAGCCAGAGCCCAGGCCATTTAACGTTGGGATTTAAAGTGGAATTATTCTGTCATTGTTATTGCT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160405 lncRNA downstream 46881 30440889 ~ 30448161 (-) True LOC120568429
TU160366 lncRNA downstream 175204 30316096 ~ 30319838 (-) True G119014
TU160363 lncRNA downstream 219695 30274707 ~ 30275347 (-) True G119012
TU160334 lncRNA downstream 274940 30219713 ~ 30220102 (-) True G118990
XR_005640760.1 lncRNA downstream 345413 30144044 ~ 30149629 (-) True LOC120568731
TU160451 lncRNA upstream 270105 30794967 ~ 30795784 (-) True G119073
XR_005640806.1 lncRNA upstream 340045 30864907 ~ 30876111 (-) False LOC120568929
TU160580 lncRNA upstream 652525 31177387 ~ 31197976 (-) True G119171
TU160579 lncRNA upstream 657980 31182842 ~ 31197976 (-) False G119171
TU160589 lncRNA upstream 659725 31184587 ~ 31237816 (-) True G119180
XM_039815957.1 mRNA downstream 17857 30442385 ~ 30477185 (-) False LOC120568429
XM_039816749.1 mRNA downstream 56390 30319952 ~ 30438652 (-) False LOC120568974
XM_039816748.1 mRNA downstream 56390 30319952 ~ 30438652 (-) True LOC120568974
XM_039816750.1 mRNA downstream 56390 30354874 ~ 30438652 (-) False LOC120568974
XM_039814658.1 mRNA downstream 520753 29970090 ~ 29974289 (-) True LOC120567690
XM_039814580.1 mRNA upstream 192543 30717405 ~ 30726080 (-) True LOC120567647
XM_039816681.1 mRNA upstream 515422 31040284 ~ 31155724 (-) False LOC120568925
XM_039816679.1 mRNA upstream 515422 31040284 ~ 31155723 (-) True LOC120568925
XM_039816680.1 mRNA upstream 524823 31049685 ~ 31155725 (-) False LOC120568925
XM_039816682.1 mRNA upstream 675679 31200541 ~ 31202192 (-) True LOC120568926
TU160248 other downstream 845250 29644363 ~ 29649792 (-) False LOC120567741
TU160179 other downstream 1074390 29420379 ~ 29420652 (-) True G118856
TU160079 other downstream 1508723 28986091 ~ 28986319 (-) True G118764
TU159738 other downstream 2776283 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 2780652 27713467 ~ 27714390 (-) False G118524
TU160542 other upstream 339384 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 339384 30864246 ~ 30876080 (-) True LOC120568929
TU160586 other upstream 601568 31126430 ~ 31174951 (-) True G119177
TU160575 other upstream 645060 31169922 ~ 31171610 (-) True G119169
TU160576 other upstream 645520 31170382 ~ 31171610 (-) False G119169

Expression Profile