RNA id: XM_039816299.1


Basic Information

Item Value
RNA id XM_039816299.1
length 2475
RNA type mRNA
GC content 0.51
exon number 16
gene id exoc3
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8333508 ~ 8347264 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGCAGAAGCGGGTGGTGCTGGTGCTGGGCGGAGCTCTAATGAGGAAGAGGGGAACACAACACcataacttagctagctagcttgtcaGAAATATCGAAGTAATAATCGTAGAAATGCATTTCATCCTCCCTACGTGTAGTCCCTAGGTGCCTGAGCTCAAGAGTGTTTACATGAAGCCTTTGGATACGACTGGTACTATATACTACTGAGCAACACTATGGAGGAGACGAGTCGGGAGGCGGTTGCCACGGCGGTGCAGCGTGTGGCAGGGATGCTGCAGCGATCGGACCAGCTGGACAAAGTGGAGCAATACAGAAGAAGAGAGGCTCGCAAAAAGGCCTCTGTGGAAGCCAGGCTGAAGGCAGCCATCCAGTCCCAGCTGGATGGCGTTCGCACCGGACTGACCCAGCTGCACAGTGCTCTGCTGGATGTCAAGGACATCCAAGGCTCACTGGCTGATGTGAGTAAAGACTGGAGGCAGAGCATCAACACCATAGAGAACCTGAAGGATGTCAAGGATGCTGTAGTCCAACACAGTCAGCTGGCCTCAGCTGTGGAAAAccttaaaaacattttctctgTACCAGAGATTGTGGCAGACACGCAGCAGCTGATAGAGCAGGGAGAGCTGCTGCAGGCCCACAGGAAGCTGATGGAGCTGGAGTGTTCACGGGATGACCTCATGTACGAGCAGTACCGTATGGACAGCAAGAACACAAGCGACATGAACCTCATCTCCATTTACTTTGAAGATGTTCAGGGGTTGTCAGATGAACTGGCCAAGCAGCTATGGATGATACTGCAGCGGTCCATGTTGACAGTTCGCCGTGACCCTACTATGTTGGTGTCATCGGTTCGCATCATTGAGCGGGAGGAGAAGATCGATCGACGCATGGTCGACCGTAAGAAGCAGACCGGGTTCATCCCGCCTGGACGACCCAAACGGTGGAAGGACAAGATGTTTCAGGTGTTGGAGGGTACAGTCGGCACCCGCATTGAGGGCACCCAGGCAATGACAAAAGAGGCTGATAAAATGTGGCTGGTTCGTCTTTTAGAAATAACCAGGAAATATGTTCTGGATGACCTCATCGTTGTCAAGAACCTCATGGTGCAGTGCTTCCCCCAGCACTACAACACTTTCAACAGGTTTTTCGGCCTCTACCACAGTGCTGTGTCCTCTCGTGTCAAAGAACTGGCCTCTGAGGATTTAGAGGCTAATGAGATCGTATCCCTGCTAACCTGGGTCCTCAATACATATaagagTGTGGAGATGATGGGCCACCCAGAGCTGTTTTCAGAGTGTGACATCAACCAGCTGGAGCCTCTGCTGCCTCAAGATGTGGTGGATGACCTGCTCAGCAAATATGTCAAGACTTTTACATCTAATATAACAGGCTGGCTGAGGAAGGCCCTGGAAACGGACAAGAAGGACTGGCAGAAAGAAACGGAGCCTGAGGCTGACCAAGATGGATACTACCAGACCACACTGCCCGCCATAGTCTTTCAgATGTTTGAGCAGAATCTGCAAGTCGCTGCGCAGATTGACAACGATTTTAAAGAGCAAGTTCTGAAGCTCTGCCTGAAACAGATGAACACTTTCCTTATCAGGTACAGAGAGGAGGCGGTGACCTACAAAGAGGAGCacatgagagacagacagatgccTCAGtgttatgtacagtacatgataGCCATCATTAACAACTGCCAGACATTCAAAGAGTCCATTAACAGTCTGAAGAGGAAGTACTCGCAGTCCTCCGAGCCCACTGACAGTGATGCCGCCATAGAGAGGACGCTCAATGAGGTGGCCAAGGAGGGATGCCAGTTCCTATTGGATGAAGTCTTCCTAGACCTCGAGCATCACCTGAATGAGCTGCTGACGAGGAAGTGGCTGACGGGCTCTCATGCTGTGGACACCATCTGTGTGACAGTGGAGGACTACTTCAATGACTTCAACAAGATCAAGAAACCCTTCAATCAGGAGATGACGAGCGAAGCCCTGCGGAGGGTGGTGGTGGAGTACATTAAAGCAGTGATGCAGAAGAGGATCACCTTTAAAAATGCtgatgagaggagagagggagcggAGAGGATGATCAAAGAGGCTGATCAGTTCAAGTTCCTCTTCAGGAAACTGGCTGCCGGTGAAGACACAGACCGGCTTTGTGGTGCCATCGCCGCCATCGCTGAGGTCTTCAAGCTGACTGACCCCACGCTGCTGTTCCTGGAGGTCACCACTCTGGTGTCCAAATACCCTGACATCAGGGAGGAACACATCCAGGCGTTACTGGCAGTGCGTGGCGATGCCAGCAGGGAAATGCGCCAGATGATCATAGGGACTCTCAGCGAGAACAAAGTGTCCTACGCTGGTGTCACACAGCCCATCTTCAAAGACATCACCGTGCCCACCATGACCATGACGACCATGACTACCATGACCTCCATGGCAACTGCAAAGCTGCTCAAATAA

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0000145 exocyst cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152231 lncRNA downstream 114540 8215909 ~ 8219170 (-) True G112923
TU152232 lncRNA downstream 120939 8212120 ~ 8212771 (-) True G112924
TU152230 lncRNA downstream 122653 8210827 ~ 8211057 (-) True G112922
TU152192 lncRNA downstream 141126 8139450 ~ 8192584 (-) True G112897
TU152206 lncRNA downstream 273677 8056602 ~ 8060033 (-) True G112903
TU152301 lncRNA upstream 108082 8454491 ~ 8454705 (-) True G112980
TU152305 lncRNA upstream 151324 8497733 ~ 8497975 (-) True G112984
TU152307 lncRNA upstream 160819 8507228 ~ 8507466 (-) True G112986
TU152308 lncRNA upstream 162189 8508598 ~ 8510377 (-) True G112987
TU152309 lncRNA upstream 164424 8510833 ~ 8537144 (-) False G112988
XM_039816591.1 mRNA downstream 871 8318547 ~ 8332839 (-) True LOC120568861
XM_039816402.1 mRNA downstream 20321 8284930 ~ 8313389 (-) True LOC120568719
XM_039815780.1 mRNA downstream 50678 8257652 ~ 8283032 (-) True LOC120568351
XM_039815918.1 mRNA upstream 33763 8380172 ~ 8391323 (-) True LOC120568405
XM_039816552.1 mRNA upstream 283080 8629489 ~ 8639174 (-) True LOC120568830
XM_039816937.1 mRNA upstream 390248 8736657 ~ 8764268 (-) False LOC120569082
XM_039816935.1 mRNA upstream 390248 8736657 ~ 8764085 (-) False LOC120569082
XM_039816934.1 mRNA upstream 390248 8736657 ~ 8764085 (-) False LOC120569082
unassigned_transcript_534 other downstream 2105926 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 2106964 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 2112613 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 2113176 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 2113756 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 141058 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 434043 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 526025 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 527001 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 545522 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile