RNA id: XM_039816310.1


Basic Information

Item Value
RNA id XM_039816310.1
length 2024
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC120568656
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31682200 ~ 31692546 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCGTTAAACTCGAAGAAGGATGGCCAAGAAGACAATGACGTAGCATCCTCGAAATTCCGGCTTCGGAGGATCCTTCCTTGACTTTGAGAAACaccagagcctgtctatggagagcctgttcactccctatctcactccctattaagccccattgtaccaacccggaattttcccgagagtggaagttctccccttattagacattctctgaaAACACCCAGAAGAACAACAACAGCGTTCttcctgaggcctgtactacgaagcaagatttggcgttaacgagTGCAACCTTGTGAAAGAAAAGAACAGTAGTTTCAGAAGAGATGTCCTCCCAAGTCCGACTGAGGCTGCTGCCGAGAGCCAGATGCATGTTTGATGAGCCGGTTCAGGTAAAGGTGGCCGGGCTGAGGGCGAGACAGGTGGTCACCATGAGAGCCAGATGCACTGACGACAAGGGACTGGTGTTCAGCTCCTCAGCCACCTACAAGGCTGATGGGAGCGGGGAGATCGACCTGGAGAGAGACCCCTCTCTCAGCGGGAGCTACGTCGGGGTGGAACCCATGGGTCTGCTGTGGTCCATGAGAGCAGACTCCTTGCACAAAAGGTTTCAGATAAAAAATTCACTAAACCCTCATGTGGTGAAGTTATCTGTGCacagggaagaggaggaggaagaggagggggagggcaGGATGCTGGCAGAGGCGACCAATGAGAGGCTTCTGATTGGAGACGGAGTTAGCCGGCTCCCCATCAAAGAGGGGAATATCCGTGGAGTCCTGTTCACTCCCACAGGAAGAGGTCCATTCCCTGCCGTGTTGGATTTGTACATTTTAGGAGGAGGTTTGTCAGAGAAAAGGGCTTCTCTGCTTGCCAGTAGAGGATTTGTGGTCCTGACTGTAGTGGCATATGGTTATGATGACATGCCCAAGAAGATTAAAGGGGTCCATCTGGATTATTTTGAGGAAGcaatacagcttttaaaaaaacaagataagGTGGGCAGTAAAGGAGTTGGTGTATTATCATTTTCCAAAACTGGAGATGTTGCACTATCAATAGCCTCTTACCTGCCAGGTGTTGAGGCCACAGTGTGCATCAACGGCTGCTGTTCCAATACAGTTTTACCCCTCTACCATAAGAAGAGCCAAATCCTCCCTCCGTTAATGTTGGACATCAGTAAGATGGTTCCCACTGAGTCAGGGGCCTTTATGGGCAAGAATGTTATGCATAATTCGCTGGCAGAGGAGAACAAGGCCACCCTGGTCCCCATTGAACAAGCCAAGGGACGTTTCCTCTTTGTGGCTTCAGAGGACGACCTCAACTGGGACAGCAAGGCTTACATGGACCGGATGGTGGAGAGACTACAGCATCATGGGAAGGACAACTTTGAGAGTGTGTCTTACCCTGGAGCAGGACATTACCTAGAGCCGCCATACGGACCCTACTGCCCCTCCAGTTTTCATGCGTTTGGTGGCACGACAGTCCTGTGGGGGGGTGAGCCCAGGTCCCATGCAGCAGCTGAAGTCCACCTGTGGAGGAAGATCCAGGAGTTCTTCAGAACTCATCTCAGCTGTGATGCTACACAAACTAAAGCCAGATTATAGATACAAATACAGTTGAAGTTAATTTAATGTTTTACAATTAAGAATCTCTTTGTAACATTATATCTAGGAGGAtgtaaaagtgtatttttgtCTTCATTTTTGTATGGATAAGGATTATAAAAATGTAAGTGCACTAAAGGCAGACTGCAGCGTATCAGCCGCTCTGCTGAgtaggtgattggctgcaatctgccgtCCTTCCAGGACCTGTGTGTGTCCAGGACCCTGAGGCGGTCAGGAAAGGTTGTTGACGATCCCTCTCACCTCAGACACAAACTGTTTGAacccctcccctctggcagaAGGCtgcggtccatcaggaccaaaacctcacaccAGTTTCAGTACCCCACCCTAGACACTACACGTTACATTAACGCACATCCTGGACTAAAACCTGTCCATTGCACACTATA

Function

GO: NA

KEGG:

id description
K01068 ACOT1_2_4; acyl-coenzyme A thioesterase 1/2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640619.1 lncRNA downstream 18376 31660615 ~ 31663824 (-) True LOC120567841
TU160702 lncRNA downstream 67876 31614016 ~ 31614324 (-) True G119284
TU160691 lncRNA downstream 211041 31469613 ~ 31471159 (-) False zeb1a
TU160678 lncRNA downstream 225046 31456893 ~ 31457154 (-) False LOC120568745
TU160677 lncRNA downstream 226803 31455053 ~ 31455397 (-) True G119260
TU160792 lncRNA upstream 156892 31849438 ~ 31915814 (-) False G119347
TU160786 lncRNA upstream 220132 31912678 ~ 31915608 (-) True G119347
TU160790 lncRNA upstream 220132 31912678 ~ 31915608 (-) False G119347
TU160804 lncRNA upstream 224108 31916654 ~ 31917970 (-) True G119357
TU160805 lncRNA upstream 225493 31918039 ~ 31919127 (-) True G119358
XM_039815925.1 mRNA downstream 107007 31469595 ~ 31575193 (-) False zeb1a
XM_039815926.1 mRNA downstream 108510 31469595 ~ 31573690 (-) True zeb1a
XM_039816425.1 mRNA downstream 225043 31455599 ~ 31457157 (-) True LOC120568745
XM_039816682.1 mRNA downstream 480008 31200541 ~ 31202192 (-) True LOC120568926
XM_039816680.1 mRNA downstream 526475 31049685 ~ 31155725 (-) False LOC120568925
XM_039816309.1 mRNA upstream 4257 31696803 ~ 31710791 (-) False LOC120568655
XM_039816308.1 mRNA upstream 4257 31696803 ~ 31710791 (-) True LOC120568655
XM_039815236.1 mRNA upstream 21741 31714287 ~ 31799338 (-) True LOC120568044
XM_039815230.1 mRNA upstream 21741 31714287 ~ 31786187 (-) False LOC120568044
XM_039815234.1 mRNA upstream 21741 31714287 ~ 31786187 (-) False LOC120568044
TU160692 other downstream 107010 31490252 ~ 31575190 (-) False zeb1a
TU160586 other downstream 507249 31126430 ~ 31174951 (-) True G119177
TU160575 other downstream 510590 31169922 ~ 31171610 (-) True G119169
TU160576 other downstream 510590 31170382 ~ 31171610 (-) False G119169
TU160545 other downstream 806120 30864246 ~ 30876080 (-) True LOC120568929
TU160835 other upstream 354931 32047477 ~ 32051439 (-) True G119379
TU160944 other upstream 523956 32216502 ~ 32226360 (-) False G119465
TU160945 other upstream 525961 32218507 ~ 32226360 (-) True G119465
TU161095 other upstream 1069799 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 1069799 32762345 ~ 32765076 (-) False fcer1gl

Expression Profile