RNA id: XM_039816313.1


Basic Information

Item Value
RNA id XM_039816313.1
length 3304
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC120568659
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23736978 ~ 23786041 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaagagagagagagcagagagagggtTTGTCAGTCTCCCTCCTCCCAAATCCAGAAAAGCTTACCAAGGAAAAAGGAGGAGTGTCGGGGCTGAGAGAGACGCAGAGGAATTTCCGAGGatattttctcttctttcccccccccctcttgatattaaaaaattaaaaagttggAGGCGAGGCAGCAGGGACCGTGGTCAAGGATGGACGAGCAGCCTCGGTTGATGCACTCCCACGGGGTAGGCATGGCCGGACACCCTGGCCTGGCGCAGCATATGCAGGATGGCACGGCGGGGACGGACGGAGAGGGAAGAAAGCAGGACATCGGAGACATATTACAGCAAATAATGACCATCACAGACCAAAGCTTAGACGAAGCACAGGCGAGGAAACATGCACTGAACTGCCACAGAATGAAACCTGCTCTCTTCAACGTCTTGTGTGAAATAAAGGAGAAAACAGTGCTCAGTATCCGTGGCGCCCAGGAGGAAGAGCCCCCAGATCCTCAGCTGATGCGACTGGACAACATGCTGCTGGCGGAGGGCGTGGCCGGGCCGGAAAAAGGTGGCGGGTCGGCAGCTGCTGCAGCCGCTGCAGCAGCCACTGGCGGCATCGGTGCTGACAACTCAGCAGAACACTCCGACTACCGTGCCAAGCTGTCTCAGATCCGACAAATTTACCACACAGAGCTGGAGAAATATGAACAGGCGTGCAATGAGTTCACCACCCATGTGATGAACCTGCTGAGGGAGCAGTCTCGCACACGACCCATCTCGCCCAAAGAGATCGAGCGCATGGTCAGCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTGAAACAGAGCACCTGCGAGGCCGTCATGATCCTGCGCTCACGCTTCCTCGATgccagACGAAAGAGGAGGAACTTCAACAAACAGGCGACAGAGATCCTAAACGAGTACTTTTACTCCCACCTCAGTAACCCCTATCCCAGCGAGGAGGCCAAAGAAGAGCTGGCCAAGAAATGCAGCATCACAGTCTCACAGGTATCAAACTGGTTTGGGAACAAGAGAATCCGATACAAGAAAAACATCGGCAAGTTCCAAGAAGAGGCCAACATGTACGCAGCACGGACCGCAGTCAGTGCAACCAGTGTGTCTGCTCACGGCAGCCAGGCAAACTCCCCATCAACTCCCAATTCAGCAGGTTCTGCTGGCTCTTTTAACATGTCAAACTCTGGAGACTTGTTCATGAGTGTGCAGTCCCTCAATGGGGACTCGTACCAAGGGGGGCAGGTTGGGGCCAACATACAATCCCAGGTGGATACCCTTCGCCATGTTATCAGCCAGACCGGAGGATACAGTGACAGCCTCGCAGCCAGCCAGATGTACAGTCCACAGGGCATCAACACAAATGGTGGCTGGCAAGATGCTCCGACTCCTTCGTCAGTGACATCGCCCACAGAAGGACCCGGAAGCGTTCATTCGGATACTTCCAACTGAATATGTCCATCTCTACACCTCATCTACAAAAAACATGGACTGACCTTGCTATTCACAGTATTAAACAAAGGAATTCACTGCCCCACAGTTTGGAGAGGTACTGTGAAATCCTaaccagaaaaaaaagtaatatttccTCTGCTTATAACGTTGGACATTTGGGATACAAACAAAaggtttcacaataaaaatcaaaacaataccaCAATCAATGAAGACGTTTGTACAGATTTCACATTATATTCAGAGGGCTGGGGTTGCTTATTTACTCGTAATGTTTTCACTCATAATGATGAAATGATattataaaagtaaataaatcaaatcattggTTTTACCTGAAAATACTTCATTCTACCTCTCAGCcactaaaaaaaattaaaaaatatgtcCGTGAccattatttgttttgtaaaaatgaaaCTTGTCTTTGCAAGCAAGAGGCACATCTTCTTACTTACATTTTGTTGTCTCTCACCTATTCTATGGTACGCCATTTAGACTTAAATATTGCTCAGTTGTTTACAATGTGTGCTTGATAAAAGTATGTTCATCTTCCCCTCTGTCTCCGACGAGTCAAAACAGAGTTCTGTCAGGAGATTTAGGTAACCCTGTGAAGTAtgttatctgtaaaacaataaataaatacttgtcATCAAATCGGACAAACTTGACATCATTCATTAAGATGGAGGATACATAAAAACTAATTCGTTTTTGGTTTTGGTGCTGCAGCATACTGGTAGAGTGACAGACACATAATTGCAATGAGAAAAACAGGGATTTTGCTCTATGCTGGACAAGGAGAAAAACTTTTTAATTTACTTGAATCTTTTGTGATATTTCTTATTGTTTACCACCACTTCTACAGAAGAAAAGTTTCTGACAATGCTAAAATGCTGATGTAACCAAAACAAAACAGTGTGTATTCATGGAGTccgttataatatattatttatcaAATATACACAGCATTATGTCTTTTTCGTCTCATTTAAATCTCCGTCTTCTGTCATTTAGCTCTGGTGCTACAATCAACTGAATAACACTGTCCCATTGAAAGAAATACGAGAAGAAATATCACTTTCAACGGAAGAGAAAGTTTGTCAAGAGCGTCTGTAACTGAGTTTGTTTTTCAATACATGAACCACAATCCACTTAAACAGGAAGTCATTATGTTAATAGAGTTTTACAGTGGATCCTTGCTCCTGAAACTACAGCACAGGTCCAGAAATGCTTCAGCATGGAGCCACTGATCATCGCCATGAAAGAAGCATCTGGATGCAGCTGAACTGCTGCTCAGTTCTAATGAGGACACTTTGACGTAAAGATTATGTTATGttcttcattttaatgaatggtGTCCACTTATGGGCGTTTATCTACATACGAAGCATTCAAGTCAATATATTACTCTGTTGGTACTGCTTTAGTATCCCTAGAactgacaccaaaacaaataTAGACATTTGAATTCATGCTTGTCTCAgatttttttctccagtttCATACATTTATGAACATTGTAAATGTTACCCATTAAGCACTAAAGAAGTCATTAtgtcaaataatgtgttttctgAGCAGTCTAACCTTGTTTATAGACACTTTTTATGTTGTGTGgcctatttgtttttttgtattttgttatttttttatggtATGCTTAATGTaggctaatgcttttttttttgctttcctaCTCTAGTGAATTAGCTCATGAACTTTCAACATGTGTTTATGTGCACCATTGTGCTTGACTTGCTTTGTTGGAAAGGGTTTTCAACACATTAAAAATGATATGTAATACAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158045 lncRNA downstream 274682 23446358 ~ 23462296 (-) True G117265
TU157960 lncRNA downstream 387794 23345770 ~ 23349184 (-) True LOC120569135
TU157969 lncRNA downstream 395055 23341354 ~ 23341923 (-) True G117206
TU157968 lncRNA downstream 395663 23339536 ~ 23341315 (-) False G117205
TU158097 lncRNA upstream 49 23786090 ~ 23786473 (-) True G117302
TU158109 lncRNA upstream 29850 23815891 ~ 23819966 (-) True G117311
TU158107 lncRNA upstream 30070 23816111 ~ 23819966 (-) False G117311
TU158135 lncRNA upstream 56205 23842246 ~ 23843595 (-) True G117324
XR_005640816.1 lncRNA upstream 57790 23843831 ~ 23849958 (-) True LOC120568991
XM_039817010.1 mRNA downstream 2594 23725487 ~ 23734384 (-) True prtfdc1b
XM_039815094.1 mRNA downstream 12947 23682735 ~ 23724031 (-) False arhgap21b
XM_039816770.1 mRNA upstream 65032 23851073 ~ 23856621 (-) True LOC120568990
XM_039816483.1 mRNA upstream 75130 23861171 ~ 23865766 (-) True kncn
XM_039814877.1 mRNA upstream 119805 23905846 ~ 23912764 (-) True itm2cb
XM_039814874.1 mRNA upstream 130700 23916741 ~ 23933804 (-) False per2
XM_039814868.1 mRNA upstream 130700 23916741 ~ 23933804 (-) False per2
XR_005640657.1 other downstream 245366 23468620 ~ 23491612 (-) False LOC120568062
TU158039 other downstream 305986 23430366 ~ 23430992 (-) True G117259
TU157659 other downstream 1468419 22263123 ~ 22268559 (-) True G116969
TU157655 other downstream 1473480 22261998 ~ 22263498 (-) False G116969
TU157096 other downstream 2726409 21008049 ~ 21010569 (-) False higd1a
unassigned_transcript_560 other upstream 81911 23867952 ~ 23868025 (-) True trnai-aau_23
unassigned_transcript_562 other upstream 83114 23869155 ~ 23869226 (-) True trnap-agg_8
XR_005640840.1 other upstream 234321 24020362 ~ 24020438 (-) True LOC120569137
XR_005640841.1 other upstream 235398 24021439 ~ 24021501 (-) True LOC120569138
TU158445 other upstream 713339 24499380 ~ 24536496 (-) True G117560

Expression Profile