RNA id: XM_039816319.1


Basic Information

Item Value
RNA id XM_039816319.1
length 3208
RNA type mRNA
GC content 0.42
exon number 12
gene id tmbim1a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13186254 ~ 13195957 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCCTGCTCTTTACTGTTCCGGGAAATGTTCTTCCCTACTGCTGCTGCTCAACCTACAGGACAGACCAGAGAGAACAGACGGGCAGGCCGCCGAACAAATTCATATTAAACACAAACCTAACCGAAACTCTTCAGTACTTTGGAGTTTTTTGAAAACAGAGAGGACTTTCCGACACCGCAAAGACTTCTAGTTTTTCCATTTTACCGCTAAGAAATATTAGGTTACGACCAGACTGTTTCTTTCGTTGACATCTCATAGTTGGTAAAATGTCCAGGTCAGACTACCCTCCAGGGTACGATGACTCCCGGAACCTGCTATATGCACCTCAGGGTGGAAATTACCCACCACCCCCTGCGTATGGCTTCCCTGGCTTTGGTGGTCCCCAGCCAGGCCAGCCCTCTGCTCCCTACCCCGCTGGTCCAAACGCTCCTGTGTATCCAGGCCAGCCTGGGGGCTATCCTCAGGGTCAGCCAGGGGGCTATCCTCAGGGTCAGCCAGGGGGCTATCCTCCCGGCCCTTACCCAGGACAGCCTCACCCTGGTGGGCCTCCACGAGCTGGCTACCCCAGTCACCCTCCCATGCCGCCTGTCATGCCACCTACCATACCATCAGATATCCTGAGCTCGGGTGAGGAGTTTGCGGCAAGCGACAGCGGTTGGGACAGTCTGAGCATTCGTCATGCCTTTATCCGAAAGGTGTATTTGATTTTGGCGTCTCAGCTCCTTGTCACCACAGCCATTGTGGCCGTATTCACATTTGTCCAACCTGTCAGATCCTTCGTACAGAAAAACCAAGCTATCTACTGGGCATCATAtgCTGTGTATATTGTCACCCACCTTGTGCTGGTCTGCTGTAAGGGCCCCCGGAGAAAGTTCCCATGGAACGTCATTCTGCTGTTCCTCTTTaccCTGGCTTTGTCCTACATGACTGGATCCATTTCCAGTTACTATGATACAAAAGCAGTGTTTCTCGCTCTGGGGATCACTGCCGTCGTCTGCATCGCTGTCACCGTCTTCTGCTTCCAGACAAAGGTGGACTTCACCAAGTGCCAGGGCCTCTTCTGTGTCCTGGGAATTGTGATGTTGGTGACTGGCATTATTGCAACTATTGTGCTGTCATTCAAATATatTCTGTGGCTTCATATGCTTTATGCAGCGATGGGAGCCATAGTGTTCACTATGTTCCTAGCGTACCACACGCAGCTGCTGATAGGGAACAGGAAGTACTCCATCAGCCCAGAAGAGTACGTGTTTGCCGCGCTCTCCATCTACGTTGACATCATTCAGATTTTCCTTTTCCTGCTGCAAATTATCGGTGCCTCGACCAAATAAGTGCACACAAGGGTACACAAGCAACTTGGGTCAACAGAGTGCAGATTAACACCTCCAAAACCAttctgtgccttttttttttttttttttttttaaaccttttgctttgttttcagCCAGAAtcagaatacatttttaaaatcatgATGCACTCCGGTGAAAATGTCTTAGGCATGAATTTGAGATTTGGTCATAGGTTAATCCTATGACCAAAAAGATTTCTTTTCCCTGaaattaatatttgtgtgtttctgtattaaGCAACTTATCAGTGGTTTAAAAAGAATATTAATACTACAGTATAAATACAGCAAATACCTTTAGACACTGGATTTAAGTTGAGGCAGACAGCGTCTCAACCTTTCTTCTCTGCATGTACAAACTGTGGCCAATCTGTATATATGTTGAGAAAATGGGCAACcatgtttattttatgttcAACCTCCCAATTTGCCAACAAAGAGGCCCATCTCTCTGGTTGACTTTGAAGTACAGTAGGAGGGGTTGGCAATACCAGAAAATTGGTTTCCGATACCAAGTAACATCAGGGCCAGGATCGTTTTTAATACCGATACTGATAcgctttatctttatttatttgtgtatgaATCATTAATAGGCTACTTCTGAATAAATTTTTATTTACCAATAATTAGTTTTTCAAACATAAGGCATTATACGCTGTTTATAGTTCCACACTTTTCTGAGTTTGATGAAAGGATTGTCGGgttaaaaacaatttgcctACCAGCACTTCTAAAGCTAACCACTTATCTTATAAtacctcatttgtttaatccctaaaaaaaaaacagtgtataCTGGACCTTTTCTACTAGTAACTTCCTGAACTCATTTTTATAgtaaggtttttgtacagactAAACAAACAAGGTAGAAAGGGTTATTTAGCGAGCTTTAAACGTGCTGGTAGGTTTGTTACTTTTGGACAGACCAGGCTAACCGTTTcccatttttttgtctttatgctaaactaagctagcCTGTTGCCAGCTcgcttcatatttagcatacagacGTGAGCGTGATATCGATCACCTTTTAACTCTCAGCAAATGTATCAAGTGAATGAGCATAGTTCTCAAAATATTGGAACTTGTAATGATTTGCATGTCAGAAGGCAAAACAGGCTTTCATGGTAAATAGTAATTGAGATGTGAAGAGAAGTGTTTATGTGCAAAAAAACGTGATGTTACATGATGTAACCTTTGCATTAATCCTAATGATGCTAGTATGGCTGCTCAAAACTACACTTGGTATCTGCAGTATTGATACTTTAGTGATagataaaaagcaaaaacagcTCAGTACACCTAATGATAGCCACTGACCTGCTGTCATGGCTTCATATTGTAACTATATATCATAACTATATGCATTCTACATCCCTACAGTGCCTTCACAGGGTGAAGTTTCTGAGTTtagattttgtatttttttttttactttaagaaGTACAGGGTTATATTCCACCAGTGTTTTATAGTATTGATACATATGTCTGTTCATGTATTCTCGTCCAATCTGGGTCAGATACTGAGTGCCAGCAGGGTGGGTTTGTCCATACAGGATAACACAATCGGGGCCATGGTGTTAAATTATTGGAACATTCCTGAAAGTCATTGAGTTCAAACCAATGCGTGTCTAAAAGCTCCTAAATGATCAACCCCAACCAGCTGGTCCTCTGCACATGTTTATATTCAGTATAGACCCAAGTTACATACAACCCTTGACTCAAACAACTAAGGCAGACATTTTAATATGTGCAGCACAGATGATCAGTGTGGGGGTATGGTAGGGTGATGAGGAAAATGTGTTTGCCTTTTcatattaaataaacatttgtatTTCATA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154011 lncRNA downstream 8503 13176803 ~ 13177751 (-) True G114177
TU153937 lncRNA downstream 18548 13072245 ~ 13167706 (-) True G114129
TU153934 lncRNA downstream 21419 13095333 ~ 13164835 (-) False G114129
TU153994 lncRNA downstream 68804 13114645 ~ 13117450 (-) False G114166
TU153995 lncRNA downstream 68804 13114645 ~ 13117450 (-) True G114166
TU154019 lncRNA upstream 1788 13197745 ~ 13223865 (-) False G114183
TU154021 lncRNA upstream 23320 13219277 ~ 13223865 (-) True G114183
TU154040 lncRNA upstream 84974 13280931 ~ 13286164 (-) True G114196
TU154045 lncRNA upstream 90694 13286651 ~ 13287220 (-) True G114199
TU154049 lncRNA upstream 92225 13288182 ~ 13288993 (-) True G114202
XM_039815657.1 mRNA downstream 27964 13152095 ~ 13158290 (-) True LOC120568263
XM_039815658.1 mRNA downstream 34776 13132932 ~ 13151478 (-) True LOC120568264
XM_039815660.1 mRNA downstream 70965 13112363 ~ 13115289 (-) True cfap410
XM_039816177.1 mRNA downstream 210926 12966466 ~ 12975328 (-) True LOC120568578
XM_039815916.1 mRNA downstream 245486 12931398 ~ 12940768 (-) False xirp1
XM_039816525.1 mRNA upstream 782 13196739 ~ 13207620 (-) True casp8
XM_039816524.1 mRNA upstream 782 13196739 ~ 13206963 (-) False casp8
XM_039816526.1 mRNA upstream 782 13196739 ~ 13206226 (-) False casp8
XM_039816340.1 mRNA upstream 12073 13208030 ~ 13214290 (-) False LOC120568680
XM_039816339.1 mRNA upstream 12073 13208030 ~ 13214290 (-) True LOC120568680
TU153973 other downstream 97691 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 417629 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 583345 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 967987 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 2297302 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 1417656 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 1599961 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 2094229 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 2094229 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 2215205 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile