RNA id: XM_039816328.1


Basic Information

Item Value
RNA id XM_039816328.1
length 3929
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120568674
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 38620336 ~ 38628410 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTTGAATCGGGGGGGAAGTTTACAGTGCGCTGACAGACTTTTGGAGAGTTCAGTGTTGTGCGCTCTCGGTGCGTCACACGCTCCAAAACCTCCAGTGGAAGCGCACGGCTCCAGACGACCATACATGCACGCACAGCCGAGACTCCAGCACCGCTTCGTTTTCTCCACAAGCTTGAATTCGCTTCTACTTGTGGCTGCATCTTAGGAGTGAAATGGATGTCATCCCCATGTGTAGCATCTTCCAGGAGCTCCAGATTGTGCACGACACCGGATACTTTTCAGCTTTACCATCTCTGGAAGAGtactggcagcagACCTGCCTGGAGCTGGAGAGGTACCTCCAGAGCGAGCCCTACGTCTCGGCCACAGACCTCAAGTTTGAGAGCCAGGAGGACCTGTGGAGCAAGCTGATGCTCGCCTGCGGGGACAAGTCCAACGAGTCGGACCCAAAGATCCCCCGCATcaaggaggaggaagacaatCAGGACAGCCAGCACCTGGACGCCGGCGGCTTCAACTCGGACGCCAGCAGCGAGGCCTCGGACAGCTCTGAGGAGCTCTCCCCGACTCTGGACTTCTCCTCCAGCTCTATGACTGACATTATGGGCGACGGTGGCGAAGACCTGGGCTCGGCCATCATCAGCACTCCGCCGTCCTCGCCGGAGCTGGCCAAGGAGGGTTCTGTCGCCAAGGTGTGGAGTGGGATACAGACTGTGCTGCACTCGCCTGGGAAAATAAGGACTGGGGGCATAGAGAGGAGCGTAGAGAGGTCGGGACTGACCAGCGGGGAGGCGTCGCCTGACGGCAGGAGGCGGGTGCACAGGTGTCACTTCAACGGATGCAGGAAGGTGTACACCAAGAGCTCGCACCTCAAAGCACACCAGCGGACGCACACAGGTGAGAAGCCCTACAGGTGTTCATGGGAGGGCTGCGAGTGGCGCTTTGCACGAAGTGATGAACTCACTCGACACTTCAGAAAGCACACTGGAGCAAAGCCATTCAAATGCAGCCACTGCGACAGGTGTTTCTCCCGTTCTGACCACCTGGCGCTGCACATGAAGAGGCACATTTAGATGGCCTCCGTGTCCAGATCTCTGAGGGATGATTCTGGTTGGTTGTCCTGACCTTTGGGGGATCAGCGAGGCCGGCGTGTCCTGGGAGCGTTAACAGGGGCACCGCCGTGTTCCAGTCGGTGGAAAAAGATGAAGCAACGCAGGCTATTATTTGCACCATACTTAGTGCCTCCAACACCTCGCTGTGGAGATTGCTCTTGAAAGGCTTTACGGAGGagcggggggtggggggcagggAGAGAacctaaaaatgtaaaaaaaataataataataattggggAAAATCTGGACTGGAGTAGACGGAAAAAGACTCTTCTGTATGGTGTTCAACGCTTTTTTCCTGGAGGATTATGGGACTCCAGCAGGGGTGCCGTTCCTCCAATGACAGTGTGTTTGCCTGTACGCATGGGGACTGTGAGTGCCTGTGACTGGATGCCTGTGCTGGCTTTATGGAGCGGATGGAGCTTGCATTGTGGAACTGCGAGTGAATTACATGAAGCGGGTGATGTTATGCGAGGGAGGTTTATGGGGGAATATTTGTGGTCTCACTCAGAATGAatgcaagcaaaaaaaaaaaaaggttctgtCTGTGCTGTTTGAGTCTATTGGCTGTGGACGGGAGTAGGGACATGTTTTGCAGAGCTGATTTGCTAGAGAGCGCCCCCTTTCTGCCCAGATGTGGAATTACGGCTCCTTATTCAAACAGGAGGTCGTTTTGTTTAGTGCAGCTATTAAATGTGCAATGTATTACGTAGCCTGTCTCAAAACATACACGCTATAAAGCTCATTTTGTTGTCCATTGTGTAAGCTCTTTATCttagtaacaaaacaacaaaaacaacggTTATACACCAACAGTTATTTCCATTATAACAGAAGTTGCATGGGATCTTGGGATGTGTAGCTCGCCTGTGTGCTTATAGGACAGCAAAATTCCCTTCAAGAGCAGCTACCTTCATATTACTCAATATCATAGTATTGTACAAAACACATAAGGcagtcattttgtttttatttaaattttcttGATAAGTTGGGAATACCACTATTGCTTGGCAACTGTCTTGATCGCCGGCTTTCCGttccttttcttcacttttgctcttttcttttgttctaTCTGTAAATGCACTGTTGACCTTACTGATGCCTTATGTAAGTGGCCTTGTCCTGTCAAGTagatctgtctctctctctctctgtctctctctctctctctcactctctctctctcactcatacacacacacacacacacacaccaaaagggGGTTGCAAGGCACTAGTGCGTTATTGAATTGCTTTATGAAGGCTCTGATCTGTACAGTCTGCCTCCTCTTGCCACAGACTCCTCTaaactcctaaaaaaaaatgaaaaaaacttaaatatcAGCTTCATAATGACtgccatttttacatttctgtgcattCTTTTTTGAACATATAACTATATCAAATATAAATCATAAAAAGCAACTCAGTTTTGTAAAGGTTTACTACCTTGTAGTATAAGGTGTTGTGAATGCACTTCTGATGGACTGTAATTTGCTGTCAAAGGTACAGAGTCTTGGAAAAATGTTCTCATGAAATATGGCATGCTCAGCCACCAAGGTTTTGAAAAAATTAAGATTTACtgcaaagaaaacattttcgCTGCAGCCATTTATATCTGTTGATATGTCCGAAGCTTCTAGTCTCTAAAGAAAAGCTTGTGTCCCTAAGAATAATGACTGCATTCTGAATACTGAGTCTTGTTTGATGTTGTAAGTAAGTCTCGCCCTCAGGGTGAGTCAGCATCTTTACTCAGCCCTGGTTTTAAACAACCCTTGATCTGACTAAACGGTACCAAAACCAGTCAAACCAGTTCAGCTGAGCCTTGCTGCAGGTCtagatgtttctgtctgtgtctgcagtTGAACTGAGATAAGACCAGGACCAGATGTATGTCTGTACCACCTTCACTGTATGCATGTTTTAACTTTAGTTACTGCTCATGACTTCAACGCACTCCTCTGTGGGTTGATACAATTCTCTGATCTTTCAGGTTTATTGAAATCCCCATCAGTTTCACAATTGGACAAACCCCATCACCATTTTAGCTTTTTGTTGAAAACATTATGGAGCCACTGTGTCTTTACTGGATAAAGTTGTGTTTAAAGTAAGACACATGTACGTGTTGAAAAAGAACGTATCTGCTTTGAGGGTATGGCTGATTTAAGTGGTAATAAATCTTGTTGATGTCTGTCACTCAATCTTACAGCTGTACAGGAGAACCTGATCAACATTAAAGGAAGTCCATACACTGAGAAATGTCAAAAATGCAAAGATATGTACATTGTAAACTAAGAATTTTGTAGGGAAACTTCTATTTTGAAAGGCAATGGGACCAAAAACAAGTGCAGTGTGTTGTTTCTAAAGATTAACTAATAAAGGCAAAAGGCGGATGAATTATTGTAAAATAGACACACTCCATTCTCCTTCATTTGCTTCTGTAACGGCATCAATTGCATATACACCTGTGGCCTATCAtctttcaagaaaaaaaatctttttttgaaCATGAATTGTTCTGGACACTTGAATTGTCACCGTTTTGCATTCTGTTGCCCACAAAgtattcttatttttatttgttttttgcaaTGTGATGATCAACTTTTGAAAGACCTGCGAAGGCGCCCTATCTTTAGCTAGAGAAACGTTATTGGATAAACATGGAGATAAAATATGAGGctctatttttgtttgttttatggcATAACAAGATTTTTTCAGTTGAAATTGTTTTGTAAAATAGTTACTGtatgaatgtattttttattggaAAATCGATAAAAAGAATTTATTGGATCTA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162884 lncRNA upstream 70298 38549670 ~ 38550038 (+) True G121043
TU162882 lncRNA upstream 71710 38548426 ~ 38548626 (+) True G121041
TU162875 lncRNA upstream 185336 38434747 ~ 38435000 (+) True G121034
TU162873 lncRNA upstream 190231 38429661 ~ 38430105 (+) True G121032
TU162864 lncRNA upstream 432089 38187975 ~ 38188247 (+) True G121024
TU162896 lncRNA downstream 53300 38681710 ~ 38682252 (+) True G121053
TU162909 lncRNA downstream 227898 38856308 ~ 38860731 (+) True G121063
TU163050 lncRNA downstream 772985 39401395 ~ 39406398 (+) True G121185
XM_039814686.1 mRNA upstream 516626 38102577 ~ 38103710 (+) True LOC120567717
XM_039816922.1 mRNA upstream 522090 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA upstream 522090 38039081 ~ 38098246 (+) False LOC120569077
XM_039815841.1 mRNA upstream 601268 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA upstream 601268 38011766 ~ 38019068 (+) False LOC120568367
XM_039814943.1 mRNA downstream 190637 38819047 ~ 38843071 (+) True pitrm1
XM_039816250.1 mRNA downstream 857720 39486130 ~ 39522532 (+) False frrs1a
XM_039816251.1 mRNA downstream 857720 39486130 ~ 39522470 (+) False frrs1a
XM_039816254.1 mRNA downstream 857720 39486130 ~ 39522239 (+) False frrs1a
XM_039816249.1 mRNA downstream 857720 39486130 ~ 39522238 (+) True frrs1a
unassigned_transcript_597 other upstream 423214 38197041 ~ 38197122 (+) True trnas-cga_7
TU162816 other upstream 601298 38011877 ~ 38019038 (+) False LOC120568367
TU162730 other upstream 1314322 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 1601546 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 2213647 36406121 ~ 36406689 (+) True G120717
TU162901 other downstream 127274 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 763562 39391972 ~ 39392776 (+) True G121171

Expression Profile