RNA id: XM_039816338.1


Basic Information

Item Value
RNA id XM_039816338.1
length 1429
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120568679
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13213316 ~ 13223854 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCCTTACCCTAACAAAGAAATGTGTCATTGTCTTCAGTCCAACACCGACAGTCAGCGACTGAGTGGACGGACAGCAGGAGATTGGCTATGAAGCTGTTTCCTGTCCATTCAATACTTTGGTCCAGTTTGCTGGTTTTGTGTGCCTCACAAAATGAGACAGAGGCCATCAATCCAGATGTCTGTCCTGATGACCATGGCAATATCTATCCACACATTTCTTCAGACCCAGGACATGACGTAGAGGAGGATACGGTGGATGCAAAAAACTTTCACTGCCTCTTTTACCCAACAAATATACTCAACTGCTCCTGGTCATTTCCCACTTTGCAAAAGGATACTCAGATCTTTGTCAATATCAgtgtgtgtgatgatcGTGGAGCAGGTCCCGCTCTGAACCTTTCGTCTGAGGAGAGAGTCGGATCGATGTCTTCATTTCTGCACGCGTACGATGGGTTGTATGTAATCCTCCATTTTAACCTAACCCTGCACGACAAGTGGACAGTCTACATCAGCCCTTTCGACATCAACAAGCTAGAGGTCCTGTCTCCACCCCCAAACATCTCTGCATCAGTCAAAGATGAAGGACTGGTAGTGACATGGGGTCTACCCCACAGTCGTGTAAACCCTCACTCCCATTGCTTTGAATACCAGCTAGACATGGGCGACCAGgaaagatTCAAAACCTTAACCAACAAGCTGTTATATATAGAACCCAGTCCAGATCCTAACAGAACCTACAATGTGAGGATGAGAACGAGAATGAGTGCCATGTGCCAACAATCTGCTCAGTGGAGTGACTGGAGTCACACCGTCAcGGTGAAACGGTCATTTTACAAACTCAACACTCTGGTCATCATCTCAATTTCACTTGGAATACCCATGATCCTCCTGGCTGCGCTGCTGCTGGTGCGCCATCAGAGggTATCTAAGGTTTTGTTTCCTCAGATTCCTTGCCCCCCGCCAAAGTACAAATATTTCCtggaaaaaaatgacacatttaaTCTCTTCCACCCTGCCCCATCAGCTGAGCCTGTAGAGGAGATCACAGAGGTGGAGGACACAGAACTAAAGCCTCGATAGATATAATAAAAGCAATATGTGAAGGACACATTCATATTACATTAAGTTATGGTTTTATTTTGCTAATGTCTTTTATAGCCTTAGCCAGCAAAGCAAGTTTGTTCAAGTTATATGTGACTCTTGTGACATGTAAAAGTATACCAATATGACTGCAAAACATGCTAAGGATCTCAAATTTAGGGAGCTTTTGCTCTGCTTGTTCATGGACTTCTTATTACTGAAACAAAGGGAATGTGTCAGTTGATGAGTTTTGATGAAATACGTTTGCTCTGCCTGAACTAGCTGATGAGCTAGTTCTGAAATGTAAACCTTTTTGCTGTGAAATAAAGATTAGTGATGCACTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153804 lncRNA upstream 10635 13204825 ~ 13207023 (+) True G114037
TU153802 lncRNA upstream 16912 13199768 ~ 13200746 (+) True G114035
TU153799 lncRNA upstream 18924 13196261 ~ 13198734 (+) True G114033
TU153788 lncRNA upstream 31295 13183339 ~ 13186363 (+) False si:ch73-71c20.5
TU153769 lncRNA upstream 64064 13152099 ~ 13153594 (+) True G114008
XR_005640785.1 lncRNA downstream 26897 13250751 ~ 13254585 (+) True LOC120568783
TU153826 lncRNA downstream 62796 13286650 ~ 13287219 (+) True G114055
TU153797 lncRNA downstream 64339 13288193 ~ 13289003 (+) True G114032
TU153838 lncRNA downstream 130400 13354254 ~ 13356050 (+) True G114063
TU153872 lncRNA downstream 245657 13469511 ~ 13472357 (+) True G114094
XM_039816320.1 mRNA upstream 31294 13183284 ~ 13186364 (+) True si:ch73-71c20.5
XM_039816866.1 mRNA upstream 34451 13176825 ~ 13183207 (+) True mcm6
XM_039817024.1 mRNA upstream 50827 13163839 ~ 13166831 (+) True LOC120569132
XM_039817023.1 mRNA upstream 54140 13159016 ~ 13163518 (+) True si:ch211-227n13.3
XM_039815662.1 mRNA upstream 92195 13123030 ~ 13125463 (+) True ndufb3
XM_039816486.1 mRNA downstream 50308 13274162 ~ 13278429 (+) True LOC120568782
XM_039816353.1 mRNA downstream 55222 13279076 ~ 13286178 (+) True LOC120568688
XM_039814776.1 mRNA downstream 165367 13389221 ~ 13392603 (+) True LOC120567765
XM_039814775.1 mRNA downstream 165374 13389228 ~ 13392603 (+) False LOC120567765
XM_039816255.1 mRNA downstream 170634 13394488 ~ 13410455 (+) True LOC120568628
TU153770 other upstream 92195 13123055 ~ 13125463 (+) False ndufb3
TU153768 other upstream 100302 13114649 ~ 13117356 (+) False rpl37a
TU153727 other upstream 242021 12929215 ~ 12975637 (+) True G113979
TU153737 other upstream 260302 12952580 ~ 12957356 (+) False LOC120569010
TU153451 other upstream 630495 12582642 ~ 12587163 (+) False ap1g2
TU154336 other downstream 1063296 14287150 ~ 14295268 (+) False LOC120568245
TU154337 other downstream 1064501 14288355 ~ 14290960 (+) False LOC120568245
TU154338 other downstream 1065683 14289537 ~ 14295993 (+) False LOC120568245
TU154339 other downstream 1068906 14292760 ~ 14295268 (+) False LOC120568245
TU154847 other downstream 1927942 15151796 ~ 15157199 (+) True G114789

Expression Profile