RNA id: TCONS_00008597


Basic Information

Item Value
RNA id TCONS_00008597
length 461
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id XLOC_003417
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 21612671 ~ 21759025 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCGACAGTGCGCATGCGCATCTTCAGGTGAGCGGTAAAGTTTGGGCAATCATCCATAAATGTGGGTCTTACTACGccattaattcataacaaacctAGAGGAAATGAAATATCCTAAACGTTCACAGGCAggctatttacatttttacaagaaAAATCCAATTGTTCGAAATATGAAAGGACTTTTCCACAACCTAAGTGGCCACTGTCACGCCTGAGACGAGATGTTCAGGTTTAAAGaCTCGAAACAGCTTTGAAACTCATCCCGGACTGGTTCTTTAACAGCACCTGAGGGCGGGAGACACAGGTTATGTGTCCGGGTCTTTCTCGCACAACTTCCTCGACCCCATCGCTCCCATCCGAGAAGgAACTATTCTTCgccggactcaaaccccgttgtcagggtcaacttctctctgcgtctcaaatctgCCAACGTACGTGGCGAGCTACTggccaa

Function

GO:

id name namespace
GO:0071932 replication fork reversal biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0000725 recombinational repair biological_process
GO:0061980 regulatory RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008591 lncRNA upstream 203873 21406687 ~ 21408834 (+) True XLOC_003415
TCONS_00008590 lncRNA upstream 305945 21302712 ~ 21306762 (+) True XLOC_003414
TCONS_00006682 lncRNA upstream 426023 21185469 ~ 21186684 (+) True XLOC_003413
TCONS_00008588 lncRNA upstream 682383 20928241 ~ 20930324 (+) False XLOC_003407
TCONS_00008600 lncRNA downstream 143652 21902677 ~ 21903694 (+) True XLOC_003419
TCONS_00006696 lncRNA downstream 837701 22596726 ~ 22599593 (+) True XLOC_003423
TCONS_00008601 lncRNA downstream 1161444 22920469 ~ 22927188 (+) True XLOC_003426
TCONS_00008603 lncRNA downstream 1835324 23594349 ~ 23597671 (+) False XLOC_003430
TCONS_00008602 lncRNA downstream 1835324 23594349 ~ 23597671 (+) True XLOC_003430
TCONS_00006683 mRNA upstream 14180 21586335 ~ 21598527 (+) False XLOC_003416
TCONS_00006684 mRNA upstream 14299 21587950 ~ 21598408 (+) True XLOC_003416
TCONS_00006681 mRNA upstream 473204 21137948 ~ 21139503 (+) True XLOC_003412
TCONS_00006680 mRNA upstream 512924 21096339 ~ 21099783 (+) True XLOC_003411
TCONS_00006679 mRNA upstream 526453 21076872 ~ 21086254 (+) True XLOC_003410
TCONS_00006687 mRNA downstream 151318 21910343 ~ 21962834 (+) False XLOC_003420
TCONS_00006688 mRNA downstream 151727 21910752 ~ 22094392 (+) True XLOC_003420
TCONS_00006689 mRNA downstream 350862 22109887 ~ 22165841 (+) False XLOC_003421
TCONS_00006690 mRNA downstream 375515 22134540 ~ 22169026 (+) True XLOC_003421
TCONS_00006692 mRNA downstream 615394 22374419 ~ 22582127 (+) False XLOC_003422
TCONS_00006677 other upstream 560363 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006668 other upstream 1579522 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006652 other upstream 2521895 19060099 ~ 19090812 (+) False XLOC_003396
TCONS_00006645 other upstream 2936150 18676442 ~ 18676557 (+) True XLOC_003392
TCONS_00006630 other upstream 3627933 17964689 ~ 17984774 (+) False XLOC_003382
TCONS_00006698 other downstream 954990 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006700 other downstream 1638245 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006723 other downstream 2419798 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006731 other downstream 2580337 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006732 other downstream 2580349 24339374 ~ 24345421 (+) False XLOC_003446

Expression Profile

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