RNA id: XM_039816349.1


Basic Information

Item Value
RNA id XM_039816349.1
length 741
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC120568684
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18680600 ~ 18682419 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATAAAAACTGCACCAAAACTCAGAACTTCACTGCTACCCGGTAAGACAGgttgtaaaaaaaagatgaacaCCATCCAGGTGATTTCCCTTACCCTGCTGTCCGTTCTGGCGGCCAATGCTCAGTTCATCATGCCAGGAAGATGCCCCAAGCCTGCTGTTCAAGAGGACTTTGATGCTACCAGGTATGTTGGTAAGTGGTATGATATCCAGAGACTGCCAAATACCTTCCAGAAGGGGGAGTGCGCCACTGCCACCTACACCTTGAGCCCTGGATTTGGATTTGGTGCTCTCAACAGAGAGCTGCTTGCTGATGGGACCATTATATCCGTCATTGCCTCTGCCATAGCAGAAGATCCCTCTGAGCCTGCTAAGCTGCAGATCTTTTATGAGAACGATGCCCCTGTTCCTTACTGGGTTCTGTCCACCGACTACGACAACTACGCTCTGGTCTACAGCTGCATCGAACTCGGGGCGATGCACGCGGCACATGCCAGTATCTTGAGCAGGCAGCCCACCCTGCTTGAGGAGACAATCAAGGAGCTACATGGCACCCTGTCCTCTTTTGGAGTCGGAGTGGATAAGCTGCTCACCACCAACCAGGATGCAGCTTCCTGCAGCGCCATGAACCAGTAAACAGATTGAGATAGTCTCTACAGATTGTGGTGCATTGTGGTGCTTTTGATTGTACTTTCACTGTTTGTTTCAAACTAAGTCAATGCAATAAACTTATTTTATCGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156224 lncRNA upstream 30796 18648774 ~ 18649804 (+) True G115856
TU156191 lncRNA upstream 34217 18632716 ~ 18646383 (+) True G115826
TU156184 lncRNA upstream 78340 18600758 ~ 18602260 (+) False skila
TU156146 lncRNA upstream 190414 18488531 ~ 18490186 (+) True G115793
TU156137 lncRNA upstream 215174 18458240 ~ 18465426 (+) True LOC120567854
TU156234 lncRNA downstream 1295 18683714 ~ 18684253 (+) False G115862
TU156236 lncRNA downstream 1295 18683714 ~ 18684465 (+) True G115862
XR_005640744.1 lncRNA downstream 7215 18689634 ~ 18692121 (+) True LOC120568663
TU156238 lncRNA downstream 10586 18693005 ~ 18694301 (+) True G115863
TU156239 lncRNA downstream 11972 18694391 ~ 18694646 (+) True G115864
XM_039816360.1 mRNA upstream 6460 18660429 ~ 18674140 (+) True LOC120568691
XM_039815325.1 mRNA upstream 55423 18614798 ~ 18625177 (+) False nadkb
XM_039815326.1 mRNA upstream 55423 18615403 ~ 18625177 (+) False nadkb
XM_039815319.1 mRNA upstream 56025 18609463 ~ 18624575 (+) False nadkb
XM_039816358.1 mRNA downstream 17063 18699482 ~ 18701227 (+) True LOC120568690
XM_039816359.1 mRNA downstream 17108 18699527 ~ 18701227 (+) False LOC120568690
XM_039816657.1 mRNA downstream 33939 18716358 ~ 18718511 (+) True apoda.1
XM_039816658.1 mRNA downstream 37948 18720367 ~ 18725447 (+) True LOC120568911
XM_039814844.1 mRNA downstream 48309 18730728 ~ 18737190 (+) True and2
TU156233 other upstream 6538 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 326256 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 650705 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1240137 17407491 ~ 17440463 (+) False LOC120568596
XR_005640725.1 other upstream 2154171 16439025 ~ 16526429 (+) False LOC120568419
TU156400 other downstream 334639 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 834434 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1690816 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 2200287 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 3188534 21870953 ~ 21897391 (+) False LOC120568354

Expression Profile