RNA id: XM_039816355.1


Basic Information

Item Value
RNA id XM_039816355.1
length 1255
RNA type mRNA
GC content 0.49
exon number 13
gene id sugt1
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13289358 ~ 13310084 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCGATGCCTGCTCCTGGGGCTCGAGCTGTGGCTGCTGCCTACCGCTATCACGTTTCCTCAAGTCTCTCCACATTTTACTAGAACTTTCCTGTCACTCCTGAAACGCTGTCCACATTCTTAGCAAATCCATGGCAACCGAACGCAGCTTCCCCGATAGCTTCATTGACGAAGATCCACAGAAAGCTCTGGAGGAACTTAATGAGGCCTTGCAAGGAGACTCTAACAACGCTGACTGGTGTTGCCAGCGTGCCTATGCCCACATACTTCTCAAAAACTACAGCTGTGCTGTTGATGATGCCAAAAAAGCACAGCAGCTAAAACCCAGCCTTCCCCTTGCTTTCATGCGAACAGGAATAGCAGAATACCACCTTAACCACTGTGAGTCAGCACATGCAGCTTTCACTCAGGGACACCAACTGGATGTTTCTGACAAATCTTTTGAGATCTGGATCAAGCGGTGTGAGGAGAGGATGGGTGAGCAGACTCAGATCGGCAGCATCAACAGGACACCAGCGGTTCCACATGTGAAaCGTGACTGGTACCAAACAGAGTCTCAAGTCATTGTCACAGTCATGGCAAAAAATGTACCCaaggatggtgtgtgtgtagactTCATGGAAAAAGAGctctctgccaAGATACAGCTGGCATCAGGGGAGAACTATAACCTCAACCTCCACCTCCTGCACCCAATCATCCCTCAACAGAGCAGCTTCAAGATCCTCACCACTAAGGTGGAGTTCAAGATGAAGAAGACAGATGGCATGAGATGGGAGAAGCTGGAGGGAGAAGGACAGGAGTCCAACATCAAACACTTCGATCCAAATCAGTACCCATCATCGTCCCTCAACACCTGCAAATGGGACAAGGTGGTGTTGGACATCCACGAGGAGGAGAAAAATGAGAAGCTGGAGGGAGACGCAGCCCTTAACACGCTCTTCCAGCAGATCTACTGCGATGGCTCAGACGAGGTGAAGAGAGCCATGAACAAGTCCTTTATGGAGTCCGGTGGTACAGTCCTGAGCACCAACTGGATGGACGTTGCTAAGAGAAAAGTGGAGATGAACCCACCGGACGACGTAGAGTTCAAGAAGTACTGAGCACctccctgtccctctccccTCTGTTTGGCATCATCTttcttcacatacagtacaggccaaaagtttggacacaacttctcattcaatgcgtttcctttattttcatgactatttacattgtagattctcactgaaggcatcaaaactatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154049 lncRNA downstream 365 13288182 ~ 13288993 (-) True G114202
TU154045 lncRNA downstream 2138 13286651 ~ 13287220 (-) True G114199
TU154040 lncRNA downstream 3194 13280931 ~ 13286164 (-) True G114196
TU154019 lncRNA downstream 65493 13197745 ~ 13223865 (-) False G114183
TU154070 lncRNA upstream 84382 13394461 ~ 13406160 (-) True G114215
TU154071 lncRNA upstream 84382 13394461 ~ 13396368 (-) False G114215
TU154072 lncRNA upstream 95155 13405234 ~ 13406830 (-) False G114215
TU154064 lncRNA upstream 159452 13469531 ~ 13472351 (-) False dis3l2
TU154088 lncRNA upstream 223059 13533138 ~ 13549466 (-) True LOC120568710
XM_039816485.1 mRNA downstream 53111 13232096 ~ 13236247 (-) False LOC120568781
XM_039816484.1 mRNA downstream 53113 13232096 ~ 13236245 (-) True LOC120568781
XM_039814515.1 mRNA downstream 58454 13224897 ~ 13230904 (-) True LOC120567607
XM_039814516.1 mRNA downstream 58488 13224897 ~ 13230870 (-) False LOC120567607
XM_039816331.1 mRNA downstream 71660 13214880 ~ 13217698 (-) False LOC120568677
XM_039815493.1 mRNA upstream 1722 13311801 ~ 13318339 (-) True LOC120568165
XM_039815495.1 mRNA upstream 1722 13311801 ~ 13317699 (-) False LOC120568165
XM_039815497.1 mRNA upstream 16762 13326841 ~ 13333005 (-) False ednrba
XM_039815496.1 mRNA upstream 16762 13326841 ~ 13333005 (-) True ednrba
XM_039815498.1 mRNA upstream 44150 13354229 ~ 13362042 (-) True LOC120568167
TU153973 other downstream 200795 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 520733 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 686449 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 1071091 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 2400406 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 1303534 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 1485839 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 1980107 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 1980107 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 2101083 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile