RNA id: XM_039816358.1


Basic Information

Item Value
RNA id XM_039816358.1
length 744
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC120568690
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18699482 ~ 18701227 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATAAAAACTGCACCAAAACTCAGAACTTCACTGCTACCCGGTAAGACAGgttgtaaaaaaaagatgaacaCCATCCAGGTGATTTCCCTGACCCTGCTGTCCGTTCTGGTGGCCAACGCTCAGTTCATCATGCCAGGAAGATGCCCCAAGCCTGCTGTTCAAGAGGACTTTGATGCTACCAGGTATGTTGGTAAGTGGTATGATATCCAGAGACTGCCAAATACCTTCCAGAAGGGGGAGTGCGCCACGGCCACCTACACCTTGAGCCCTGGATTTGGATTTGGTGCTCTCAACAGAGAGCTGCTTGCTGATGGGACCATTATATCCGTCATTGCCTCTGCCATAGCAGAAGATCCCTCTGAGCCTGCTAAGCTGCAGATCTTTTATGAGAACGATGCCCCTGTTCCTTACTGGGTGCTGTCCACCGACTACGACAACTACGCTCTGGTCTACAGCTGCATTGAACTCGGGGCGATGCATGCGGCACATGCCAGTATCTTGAGCAGGCAGCCCACCCTGCCTGAGGAGACAATCAAGGAGCTACATGGCACCCTGTCCTCTTTTGGAGTCGGAGTGGATAAGCTGCTCACCACCAACCAGGATACAGCTTCCTGCAGCGCCATGAACCAGTAAACAGATTGAGATAGTCTCTACAGATTGTGGTGCATTGTGGTGCTTTTGATTGTACTTTCACTGTTTGTTTCAAACTAAGTCAATAATGCAATAAACTTATTTTATCGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156239 lncRNA upstream 4836 18694391 ~ 18694646 (+) True G115864
TU156238 lncRNA upstream 5181 18693005 ~ 18694301 (+) True G115863
XR_005640744.1 lncRNA upstream 7361 18689634 ~ 18692121 (+) True LOC120568663
TU156236 lncRNA upstream 15017 18683714 ~ 18684465 (+) True G115862
TU156234 lncRNA upstream 15229 18683714 ~ 18684253 (+) False G115862
TU156255 lncRNA downstream 19138 18720365 ~ 18725428 (+) False LOC120568911
TU156276 lncRNA downstream 132316 18833543 ~ 18833742 (+) True G115889
TU156310 lncRNA downstream 141345 18842572 ~ 18842794 (+) True G115921
TU156312 lncRNA downstream 163899 18865126 ~ 18866134 (+) True G115923
TU156330 lncRNA downstream 221526 18922753 ~ 18923170 (+) True G115931
XM_039816349.1 mRNA upstream 17063 18680600 ~ 18682419 (+) True LOC120568684
XM_039816350.1 mRNA upstream 17063 18680645 ~ 18682419 (+) False LOC120568684
XM_039816360.1 mRNA upstream 25342 18660429 ~ 18674140 (+) True LOC120568691
XM_039815325.1 mRNA upstream 74305 18614798 ~ 18625177 (+) False nadkb
XM_039815326.1 mRNA upstream 74305 18615403 ~ 18625177 (+) False nadkb
XM_039816657.1 mRNA downstream 15131 18716358 ~ 18718511 (+) True apoda.1
XM_039816658.1 mRNA downstream 19140 18720367 ~ 18725447 (+) True LOC120568911
XM_039814844.1 mRNA downstream 29501 18730728 ~ 18737190 (+) True and2
XM_039816706.1 mRNA downstream 54979 18756206 ~ 18799833 (+) False LOC120568945
XM_039816704.1 mRNA downstream 54989 18756216 ~ 18799833 (+) False LOC120568945
TU156233 other upstream 25420 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 345138 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 669587 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1259019 17407491 ~ 17440463 (+) False LOC120568596
XR_005640724.1 other upstream 2173054 16439025 ~ 16526428 (+) False LOC120568419
TU156400 other downstream 315831 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 815626 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1672008 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 2181479 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 3169726 21870953 ~ 21897391 (+) False LOC120568354

Expression Profile