RNA id: XM_039816362.1


Basic Information

Item Value
RNA id XM_039816362.1
length 835
RNA type mRNA
GC content 0.43
exon number 6
gene id cib3
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18048066 ~ 18052429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGGAATAAACAGACCATCTTTACAGCACAGCAGCTAGACGCCTATCAGGACTGTACATATTTTACAAGAAAAGAAATTCTCAGACTGTTTGACCGCTATCGGGATTTGGCACCGCAACTCGTTCCCCTTGACTACACCAGCAACCCAGATGTGAAGTTACCGTATGAGCTGATTGGCAGCATGCCAGAGCTAAAGGACAACCCATTTCGTCAGAGGATCGCTGAGGTTTTCTCTGAGGACGGAGAGGGAAATATGACACTGGACGACTTCTTGGACATGTTTTCAGTCCTGAGTGAGATGGCTCCGCGTGACCTCAAGGCCTACTATGCTTTCAAAATTTATGATTTCAACAACGACGACTTTATCTGCAAGTCAGACCTTGAGAAGACACTGAACAAACTGACCCGTAACGAGCTGACAGAAGACGAGGTAAGGATGGTGTGTGAGAAGGTGATAGATGAGGCTGACTTGGACAACGATGGACGCCTGTCACTGGAGGACTTCCAGCACATGATTGTTCGAGCTCCAGACTTCCTCAGCACCTTCCACATAAGGATATAAAGAAATGAAGCAATCATGTGCATTTCTTAATTTGAGTATCACATAAAGTGGACTTACAATACTGCAGAATGCCTGGAAAGTTGGGGGATCCAGAAAGCAACTATCATTTTGTGAATAACtttaatgtgaataattttgTAAAAAGAAACACGATCTTCATCAGAGATAATCAGACTTTGCCATTTAGCAACCAGAGGAAATACTATGAGTAACTATGAATTGTCTTGTCTTTAATGGTACCATTACTGCAAATAGATTGGAATTGTACGAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23838 CIB3; calcium and integrin-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155908 lncRNA upstream 27956 18019905 ~ 18020110 (+) True G115600
TU155907 lncRNA upstream 28452 18016563 ~ 18019614 (+) True G115599
TU155906 lncRNA upstream 31109 18016563 ~ 18016957 (+) False G115599
TU155889 lncRNA upstream 80024 17967740 ~ 17968042 (+) True G115585
TU155792 lncRNA upstream 468477 17578910 ~ 17579589 (+) True G115516
TU155947 lncRNA downstream 439 18052868 ~ 18058243 (+) True G115633
TU155953 lncRNA downstream 8280 18060709 ~ 18065238 (+) True G115636
TU155984 lncRNA downstream 119250 18171679 ~ 18174071 (+) True G115660
XR_005640695.1 lncRNA downstream 180188 18232617 ~ 18233706 (+) True LOC120568296
TU156017 lncRNA downstream 181314 18233743 ~ 18234058 (+) True G115690
XM_039814518.1 mRNA upstream 2838 18043397 ~ 18045228 (+) True LOC120567609
XM_039816210.1 mRNA upstream 6337 18035952 ~ 18041729 (+) True im:7138239
XM_039814778.1 mRNA upstream 18234 18027360 ~ 18029832 (+) False LOC120567767
XM_039816979.1 mRNA upstream 62526 17975976 ~ 17985540 (+) True LOC120569107
XM_039816980.1 mRNA upstream 62526 17978594 ~ 17985540 (+) False LOC120569107
XM_039816329.1 mRNA downstream 22678 18075107 ~ 18090043 (+) True ap1m1
XM_039816330.1 mRNA downstream 22678 18075107 ~ 18090043 (+) False ap1m1
XM_039815690.1 mRNA downstream 95469 18147898 ~ 18149844 (+) True LOC120568288
XM_039815692.1 mRNA downstream 123554 18175983 ~ 18231000 (+) True LOC120568290
XM_039815693.1 mRNA downstream 123554 18175983 ~ 18231000 (+) False LOC120568290
TU155940 other upstream 18171 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 607603 17407491 ~ 17440463 (+) False LOC120568596
XR_005640725.1 other upstream 1521637 16439025 ~ 16526429 (+) False LOC120568419
XR_005640724.1 other upstream 1521638 16439025 ~ 16526428 (+) False LOC120568419
TU155276 other upstream 1819544 16226307 ~ 16228522 (+) False LOC120568164
TU156065 other downstream 252720 18305149 ~ 18354344 (+) True G115729
TU156233 other downstream 620133 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 964629 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 1464424 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 2320806 20373235 ~ 20375633 (+) True LOC120567833