RNA id: XM_039816370.1


Basic Information

Item Value
RNA id XM_039816370.1
length 2299
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC120568699
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26580603 ~ 26588571 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCAGTCTTCAACTATTGAAAATTGTGTCGTCTGGTGATCAGAACAAAGATGGGAGTCTCGACTTAAACGAGTTCAGCAAATATATGAAAGAGCACGAGAAGAAGCTGCTCCTGACATTCAAGAGTCTGGACAGAAACAACGATGGACGCATTGATGCCTCAGAGATCCAGCAGTCCCTTGCAGAGCTGGGCATGGATATCAGCAAAGAGAATGCCCTGAAAATATTACAGAGTATGGACAACGACGGGACCATGACGGTGGACTGGAACGAGTGGAGAGAACATTTCCTGTTATGCCCTGCTTACAACCTGGAAGAGATCATACGCCACTGGAAACACTCCTcgGTGCTGGACATAGGTGACAGTCTTGCCATCCCGGATGAATtcactgaggaggagaagaactCAGGTTGCTGGTGGAAGCACCTGGCTGCAGGTGCAGTGGCGGGGGCCGTCTCTCGCACTGGCACTGCCCCGCTGGACAGGATGAAAGTCTTCATGCAGGTTCATTCTTCTAAGACTAACCCAATAAGCCTGGGAGGGGGATTCAAGCAGATGATCATAGAGGGAGGTCTGACTTCACTGTGGAGGGGAAATGGCATCAACGTTTTAAAGATTGCACCTGAGACGGCAATCAAATTCATGGCATACGAACAATTTAAAAAGTTACTGTCATCAGAGGGCAAGACGATTGAGACACACAAGCGGTTTATGGCTGGCTCTCTGGCTGGAGCCACAGCACAGACAGCCATCTACCCAATGGAGGTATTGAAAACTAGACTGACCCTGAGGAAAACTGGCCAGTATTCAGGAATGTTTGATTGTGCCAAGAAGATCCTGAGGAAGGAGGGTCTCAGGGCTTTCTACAAGGGCTACATTCCAAACTTAGTGGGCATCATTCCCTACGCTGGGATAGACCTCGCTGTTTATGAGACTCTGAAGAACACGTGGCTGTCGTACCACCCTGACTCCCCTAACCCTGGAGTTCTGGTGTTGGTGGCCTGCGGGACCATGTCTAGTACCTGTGGCCAGCTGGCCAGCTATCCACTCGCACTTGTGCGCACACGGATGCAGGCACAAGCGTCCCTGGATGCATCAGACCAGTCCTCCATGACCAGTCTGATGAAGAAGATTGTAGCCAAAGATGGCTTTTTCGGACTCTACCGGGGCATCCTGCCAAACTTCATGAAAGTCATTCCCGCTGTCAGCATTAGCTATGTGGTTTACGAGTACATGAAGACTGGCTTAGGAATTTCCAAATGATGCAGCAAGCAAATGAACATTTACTTGTTTTACATATCTTACTACAGACTTGAAAATGCCTGAAAATAACTCCCAAGAAAACCTACGACGTTAAACATACAGAGCATGACTTCCACCAGCTGGCACAGGAGTTCAGTGGATGGAAAACTGTATGTATTCCACTAAAGGTCATCTGTCAGTAGCTAAACCATTTATCGTCCGTGCTGAGCATGCTTTAATTGTTATCCTGCTGTTACACATAACACACTCCCAAAATATGTACACCACCCAAAACAATATTAGACATAAAGAAAGTACTGTACTACATACAAGCAAAAACAGGATTTAGGATTGGTTGTTACATTTATCCTACTGTtattcttaaaaaaattctgttaACAAACCAAAAAGCTAGCTCAATGGGCCATACTGTTTTGATTTTTTGGTAAcagaataaatattttttaagagAAAGCTGAAGCTTATCCATTGGGGATACACCGCATCGTAAATCgtcttatttaaattaaaatgacactacaacagtttaaatgtttcaGCCCACACCCTTCAGAGGTAATTTAAGACTTTTCTAAGTTATAAACACCTTCCCCTAGAGTGACCTCAGCTCCAGACAGCAGCTGTCAACTAAAAATAACTGTCCCTGAAAAATCAATAACTTGTTTACACTGGAATACTGTGTGCCTGAAGAAAAATGCATATTGTGCAATGTGAAAATCACTAATTCTGTGTGTTATTTGATAATCATTTAAATGTGCCTTACAGCCAATCAATGTGAACTCTTTAACATCAACAGATGTGGTTTTTACTAtgcatatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataatctGTTTTCAGTCATGACTATTTATGGATTTAAATTATGGTTACTACGTAACATGGTAACACTTAAACAGTTATAACTGGTCATTGGACTAAAATACTTGCAGGGAGCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159119 lncRNA upstream 83801 26421454 ~ 26496802 (+) False wdr47a
TU159118 lncRNA upstream 84762 26455031 ~ 26495841 (+) False wdr47a
TU159066 lncRNA upstream 265973 26314265 ~ 26314630 (+) True G118009
TU158990 lncRNA upstream 272969 26306689 ~ 26307634 (+) False ece2a
TU158986 lncRNA upstream 371732 26208356 ~ 26208871 (+) True G117938
TU159201 lncRNA downstream 14085 26602656 ~ 26674451 (+) True G118115
TU159223 lncRNA downstream 73711 26662282 ~ 26664844 (+) True G118135
XR_005640824.1 lncRNA downstream 155170 26743741 ~ 26754418 (+) False LOC120569009
TU159236 lncRNA downstream 155191 26743762 ~ 26763260 (+) True LOC120569009
XR_005640821.1 lncRNA downstream 192796 26781367 ~ 26784724 (+) False LOC120569008
XM_039816421.1 mRNA upstream 14958 26559608 ~ 26565645 (+) True LOC120568740
XM_039814644.1 mRNA upstream 20962 26554070 ~ 26559641 (+) True LOC120567674
XM_039814643.1 mRNA upstream 27522 26534496 ~ 26553081 (+) True LOC120567673
XM_039814642.1 mRNA upstream 44904 26524945 ~ 26535699 (+) True fndc7a
XM_039816847.1 mRNA upstream 59500 26508928 ~ 26521103 (+) True LOC120569037
XM_039816625.1 mRNA downstream 2211 26590782 ~ 26599934 (+) False prkab2
XM_039816624.1 mRNA downstream 2225 26590796 ~ 26599934 (+) False prkab2
XM_039816626.1 mRNA downstream 2439 26591010 ~ 26599934 (+) False prkab2
XM_039815839.1 mRNA downstream 77933 26666504 ~ 26672258 (+) True zgc:85843
XM_039816801.1 mRNA downstream 203631 26792202 ~ 26813425 (+) True LOC120569005
TU159113 other upstream 162595 26416508 ~ 26418008 (+) True ccl20a.3
TU159070 other upstream 178525 26395426 ~ 26402078 (+) True G118011
TU159071 other upstream 178525 26399420 ~ 26402078 (+) False G118011
TU158989 other upstream 363562 26215727 ~ 26217041 (+) True LOC120568800
TU158825 other upstream 749908 25830055 ~ 25830695 (+) True G117829
TU159178 other downstream 2259 26590830 ~ 26600072 (+) True prkab2
TU159241 other downstream 176921 26765492 ~ 26769911 (+) True G118149
TU159378 other downstream 294988 26883559 ~ 26886030 (+) True G118234
TU159680 other downstream 1013453 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 1568402 28156973 ~ 28159589 (+) False LOC120568082

Expression Profile