RNA id: XM_039816372.1


Basic Information

Item Value
RNA id XM_039816372.1
length 2340
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC120568700
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26572397 ~ 26581219 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAGCAACAACCAGCAGCCAGCAACAGCTGAACAGTAGCGACAGACAGCACAGAGCAGGGAAAGTGTCTGTCTGCTACTTCTGTCAGGACTTGTTGCGCCACTGTCACTGACGTTTAAGAGATATCATGTCGTTCATTCTTATGAAGAAGAAGAGATTTAAATTTAAAGTAAACTTCAACTTGGACGAATTGTCATCGGTTCCCTTCGTAAACGGAGTTTTATTCTGTAAAGTTAGACTCCTTGATGGGGGCTTTGCCGAAGAGTCGTCTCGGGAGTCAGTCCAGGCCAACTGTGTACACTGGAGGAAGAAATTCTCTTTTGTGTGTAAGATGAGTGCCAATGCTGGGACAGGTGTACTAGACCCCTGTTTGTGCCGGGTGTCTGTGCGCAAGgAATTGAAGGGTGGAAAAACTTTTGCAAAGCTGGGCTTTGCTGACTTGAACCTGTCTGAGTTTGCTGGGTCTGGCAGCACCACGCGACGGTGTCTCCTAGAGGGATATGACACCAAGAACACCAGACAGGACAACTCAATTCTGAAGGTTGTCATCACAACACAACTCATGTCTGGAGACCCCTGTTTTAAAACTCCCCCATCTACAGCCATGACTCTGGGAATCCCACAGGCTGAAGCAGAGTGTCTCCTTGAGGACAGAAAGGGAGGGAACAAGCACATATCTCATTCACTCACTGTAAAGTCCGTATCAGTTCCAGATGAGCTTGTAGCATATGGTCACTCTAGAACACCCAGTCATGCGAGTCAGCATTCAAAAATCTCAGGTTACAGCTCCAATCACTCCAGTTTAACTGATCTTTGCCATCGGAGGAGTGTGTCTGCGGGTTCTGCCTCCATAGGCATCGGCAGCATCCCGGAACCTAGTGATCAGCAGGGGGAGAGCAGGACCACTCCCCCATTCTCAGCAACCTGTCAACACGCACCTGAACACTCCTCTACCCCTGCTAAAGTTCCAagTAGACATCCAGTAAAGCAGGACTCCATGGAGAATCAGCTGAAGAGAGTTGATGCCACCAGGGTGGATGCTGATGACATAATAGAGAAAATCCTGCAGAGCCAGGATTTCAGCCATGGCTTCTTGGACTCCAGTGCAGAGGAGGAGGGGCTCAGCTTGTTCGTTGGTCCTGGTGGGAGTACAGCCTTGGGAAGCCAGCATATGAGGGTCGCAGCTGGAGCCTTTGAGCAGGTGGTGATCAAGCGCTAGGCTTTGGGAAGCATCTGCCTGTCATGTCAAGGGTGCCGTATTACACTGATGCGGGGGACACAAGATTGAGTTGTAGAGGTGCTATCAGAAGTTGCTCCTCTCACTCCAGGAGATTTAATTTCTCTTAGGCAATCCCTCTGCATCTGACCTACAGTGTCTGTTGACCAGGAGAGCCCCCTAGTGTTCAAGAAGTGGAGGTGAAGGCCACAttattggaacattttggtgaCTGGGATAACTGTTGTACTGACAAAATCTATTGGTCTTCTTCTATGAAACCTGTAAGACTCAGGGTTAGTACTGTAATTCTACAAATATTGTTCACCCATCTTGAGCTGTTAAgggttttttctgctatttaaaaaagtatGCTTAAGTATCCAACCTGCTTTTGCTTTGGGATGGTTGATTTTGTTTCACCATTTTACTGTAGCGGGAGAGGGGACTGTGTCCGTTCCTTGAATTCCCATATATGTAAAGTAATAGAAAACTGACATTGTGAAATGTACATTGGTTACAGCACCACTTTGTGTCAGTAGCTCAAGCCCATTACAGATAACCACCTCTGTTCACCTGGTTGTGAGTGAGGATGCCTGCATTTAAAATACCATGAAGTTTTTATGTGTTGTTCCTTCGGTACgatgtctattttttttatgattattttttgggcttttccgcctttattcgataggacagctaggtgaaaaAGGGGGAgcacatgcaggaaatcatcacagttcagattcgaaccctggacctctgcgtcgaggcataaacctctcagtatatgtgcacctaCTCAGTAGATGTGCGCCtactctacccactgagccaacccggctaCATTATgtctattttgtgtgtgcatttgcgtttgtctgttgtctgtaaAGTCAAAAGTAATGAATATATTTTTACCACAGATTTTGCAAATGTGCCAAACTTAGTCAAATGTATATTTGCTGCCACTTAAGCAGTCTTATCTATAGTATGTAAACTATGTATGTATTCAAAGTCAGCTGTGTAAAGCTAATGACGTCTTAAgatatatttgttgtttttaagatGTTAGAATGTTGATGTTGTATTTAAGGTCaaataaaaagtacataaaAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159153 lncRNA downstream 92719 26477463 ~ 26479678 (-) True G118076
TU159151 lncRNA downstream 97441 26473887 ~ 26474956 (-) True G118075
XR_005640834.1 lncRNA downstream 145599 26421455 ~ 26426798 (-) False LOC120569074
TU159131 lncRNA downstream 146528 26421450 ~ 26425869 (-) False LOC120569074
TU159297 lncRNA upstream 80404 26661621 ~ 26665181 (-) False G118175
TU159313 lncRNA upstream 150660 26731877 ~ 26732084 (-) True G118186
TU159466 lncRNA upstream 379183 26960400 ~ 26963105 (-) False G118308
TU159467 lncRNA upstream 379183 26960400 ~ 26963752 (-) True G118308
TU159486 lncRNA upstream 498790 27080007 ~ 27142908 (-) True G118321
XM_039816393.1 mRNA downstream 593 26565990 ~ 26571804 (-) True prpf38b
XM_039816853.1 mRNA downstream 63597 26497503 ~ 26508800 (-) False gpsm2
XM_039816854.1 mRNA downstream 66272 26497503 ~ 26506125 (-) False gpsm2
XM_039816855.1 mRNA downstream 67096 26496871 ~ 26505301 (-) False gpsm2
XM_039815104.1 mRNA upstream 23644 26604861 ~ 26652958 (-) False LOC120567967
XM_039815103.1 mRNA upstream 23644 26604861 ~ 26630109 (-) False LOC120567967
XM_039815100.1 mRNA upstream 23644 26604861 ~ 26630109 (-) False LOC120567967
XM_039815099.1 mRNA upstream 23644 26604861 ~ 26630109 (-) False LOC120567967
XM_039815098.1 mRNA upstream 23644 26604861 ~ 26630109 (-) True LOC120567967
TU158687 other downstream 1649079 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 2035901 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2550896 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 2551959 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 2703171 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 80404 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 238621 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 1089759 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 1132250 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 1136334 27717551 ~ 27718759 (-) True G118524

Expression Profile